Resource

Id Histone_ChIP-seq/ENCSR374OSUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR374OSU [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR374OSU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:07.669317+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR374OSU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR374OSU float

Histone_ChIP-seq_ENCSR374OSU
Histone_ChIP-seq ENCSR374OSU [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR374OSU [2, 12.9]
n
12,371,561
mean
5.44
sd
1.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 123715610.38% 17098
chr1 1046562 0.42% 1488
chr2 938449 0.39% 1271
chr3 417863 0.21% 602
chr4 444212 0.23% 581
chr5 673386 0.37% 933
chr6 880290 0.52% 1151
chr7 714709 0.45% 862
chr8 605733 0.42% 937
chr9 477877 0.35% 596
chr10 770172 0.58% 1060
chr11 653922 0.48% 973
chr12 780785 0.59% 1027
chr13 228378 0.20% 337
chr14 407996 0.38% 558
chr15 364189 0.36% 557
chr16 422349 0.47% 639
chr17 936781 1.13% 1189
chr17_GL000205v2_random 15585 8.40% 17
chr18 199638 0.25% 301
chr19 519792 0.89% 721
chr20 492391 0.76% 711
chr21 109985 0.24% 154
chr22 231255 0.46% 369
chrUn_GL000219v1 1478 0.82% 3
chrX 37784 0.02% 61
3341 contigs with no values (185939711 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17098 260 11587 723.57 538.5
global segment-length histogram

Files

Filename Size md5
ENCFF533EXT.bed.gz 315.23 KB 33bffd4384a430df6022bf95b2b11c19
ENCFF533EXT.tabix.bed.gz 168.57 KB 0045daeb7f1a934fa65e4bb81d53972e
ENCFF533EXT.tabix.bed.gz.tbi 82.55 KB b47bcbdde8b2be3d22eb0e5523b8cce3
genomic_resource.yaml 2.01 KB 7eeb2237d6f516e1caac6b334ca04ce4
statistics/