Resource
| Id | Histone_ChIP-seq/ENCSR372YQR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR372YQR [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (86 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN101ARE|/analyses/ENCAN101ARE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF210RUL|/files/ENCFF210RUL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 44773179 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR372YQR | float |
Histone_ChIP-seq_ENCSR372YQR |
Histone_ChIP-seq ENCSR372YQR [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years)" and target="H3K27me3"]
|
 |
[1.79, 14.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43494857 | 1.35% | 47909 |
| chr1 | 3438670 | 1.38% | 3862 |
| chr2 | 3221152 | 1.33% | 3598 |
| chr3 | 1289220 | 0.65% | 1495 |
| chr4 | 1732644 | 0.91% | 1785 |
| chr5 | 2334026 | 1.29% | 2384 |
| chr6 | 2852377 | 1.67% | 2572 |
| chr7 | 2275110 | 1.43% | 2350 |
| chr8 | 2003509 | 1.38% | 2348 |
| chr9 | 1388842 | 1.00% | 1504 |
| chr10 | 2878383 | 2.15% | 3247 |
| chr11 | 1748180 | 1.29% | 2039 |
| chr12 | 2194865 | 1.65% | 2329 |
| chr13 | 996046 | 0.87% | 1107 |
| chr14 | 2049254 | 1.91% | 2152 |
| chr15 | 1729463 | 1.70% | 2003 |
| chr16 | 2073182 | 2.29% | 2509 |
| chr17 | 2610312 | 3.14% | 2663 |
| chr18 | 905307 | 1.13% | 1119 |
| chr19 | 1957959 | 3.34% | 2135 |
| chr20 | 1909895 | 2.96% | 2294 |
| chr21 | 796902 | 1.71% | 950 |
| chr22 | 778207 | 1.53% | 1054 |
| chrX | 323488 | 0.21% | 389 |
| chrY | 7864 | 0.01% | 21 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 47909 | 215 | 47640 | 907.86 | 567 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF824JRL.bed.gz | 865.77 KB | a52fb17ac420e28dddd081d62ee93675 |
| ENCFF824JRL.tabix.bed.gz | 452.9 KB | c579bf37b23468d099cee2bf71c25b73 |
| ENCFF824JRL.tabix.bed.gz.tbi | 156.3 KB | 53fa92f4f134b78e4ff881190e341715 |
| genomic_resource.yaml | 2.05 KB | 10e2a458e86d2d918b4ce67a3e1aacb9 |
| statistics/ |