Histone_ChIP-seq_ENCSR370LLS
Histone_ChIP-seq ENCSR370LLS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR370LLS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR370LLS [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN180LQA|/analyses/ENCAN180LQA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF190AVY|/files/ENCFF190AVY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF190AVY|/files/ENCFF190AVY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR370LLS | float |
Histone_ChIP-seq_ENCSR370LLS |
Histone_ChIP-seq ENCSR370LLS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K9me3"]
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[1.83, 17.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF980EUE.bed.gz | 1.97 MB | 83943bd0fc92cba6710fed1645a05817 |
| ENCFF980EUE.bed.gz.dvc | 101.0 B | bd6c611c2d078109b67b872d64991ea4 |
| ENCFF980EUE.tabix.bed.gz | 948.46 KB | 28fd5929dd0c7e7c787202ce68623ce3 |
| ENCFF980EUE.tabix.bed.gz.dvc | 106.0 B | b46b024b74ca915b42f9b7a2bf3d9849 |
| ENCFF980EUE.tabix.bed.gz.tbi | 368.46 KB | d5e7d54858a08051cc4f0df7702e6422 |
| ENCFF980EUE.tabix.bed.gz.tbi.dvc | 110.0 B | 5673f90ff39416a58a848e7c9248dbea |
| genomic_resource.yaml | 2.79 KB | 705e6921173d0240a01ffa3fac4bcdbd |
| genomic_resource_original.yaml | 2.65 KB | 97ffe8577e76d5a1b7cc9ba682d806bf |
| statistics/ |