Histone_ChIP-seq_ENCSR368YAQ
Histone_ChIP-seq ENCSR368YAQ [biosample_summary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR368YAQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR368YAQ [biosamplesummary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN881DBW|/analyses/ENCAN881DBW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF838RXS|/files/ENCFF838RXS/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 27211636 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF838RXS|/files/ENCFF838RXS/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF838RXS|/files/ENCFF838RXS/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.27. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR368YAQ | float |
Histone_ChIP-seq_ENCSR368YAQ |
Histone_ChIP-seq ENCSR368YAQ [biosample_summary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K4me1"]
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[1.61, 21.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF122DXE.bed.gz | 2.19 MB | eeb5cb697f19532b711cdcd8f5a82284 |
| ENCFF122DXE.bed.gz.dvc | 101.0 B | 8d73c49f6d6180cba366c55456d2f7fe |
| ENCFF122DXE.tabix.bed.gz | 1.05 MB | 7e091949565675585f883f7056cc4371 |
| ENCFF122DXE.tabix.bed.gz.dvc | 107.0 B | 7d625380e53741bcef9e92d83383ae14 |
| ENCFF122DXE.tabix.bed.gz.tbi | 299.3 KB | 64997b4e6a492022f8c75becc1adc5a0 |
| ENCFF122DXE.tabix.bed.gz.tbi.dvc | 110.0 B | d33a38378bc3db8953140fbe989eef42 |
| genomic_resource.yaml | 3.3 KB | 61b318c90e1754d78521f339f94a903b |
| genomic_resource_original.yaml | 3.16 KB | 38ae675f1c6489bc8d25021acdc5bea8 |
| statistics/ |