Resource
| Id | Histone_ChIP-seq/ENCSR367JIO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR367JIO [biosample_summary="Homo sapiens H9" and target="H4K8ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN947MLF|/analyses/ENCAN947MLF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN947MLF|/analyses/ENCAN947MLF/} has in progress subobject document {7bfd79a2-e8fe-4bf1-a84c-1f747f46dd4a|/documents/7bfd79a2-e8fe-4bf1-a84c-1f747f46dd4a/} audit_warning: Processed alignments file {ENCFF632MHZ|/files/ENCFF632MHZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15822812 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K8ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF101CCN|/files/ENCFF101CCN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19230638 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K8ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR367JIO | float |
Histone_ChIP-seq_ENCSR367JIO |
Histone_ChIP-seq ENCSR367JIO [biosample_summary="Homo sapiens H9" and target="H4K8ac"]
|
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[1.64, 10.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2276528 | 0.07% | 4627 |
| chr1 | 199682 | 0.08% | 389 |
| chr2 | 187912 | 0.08% | 384 |
| chr3 | 127467 | 0.06% | 273 |
| chr4 | 109693 | 0.06% | 226 |
| chr5 | 114324 | 0.06% | 234 |
| chr6 | 118185 | 0.07% | 247 |
| chr7 | 132862 | 0.08% | 275 |
| chr8 | 97638 | 0.07% | 210 |
| chr9 | 97446 | 0.07% | 191 |
| chr10 | 110425 | 0.08% | 230 |
| chr11 | 90956 | 0.07% | 194 |
| chr12 | 117248 | 0.09% | 234 |
| chr13 | 67232 | 0.06% | 136 |
| chr14 | 65750 | 0.06% | 135 |
| chr15 | 61524 | 0.06% | 132 |
| chr16 | 84103 | 0.09% | 172 |
| chr17 | 88530 | 0.11% | 175 |
| chr18 | 66050 | 0.08% | 139 |
| chr19 | 92228 | 0.16% | 182 |
| chr20 | 69849 | 0.11% | 145 |
| chr21 | 42215 | 0.09% | 80 |
| chr22 | 49888 | 0.10% | 97 |
| chrX | 85321 | 0.05% | 147 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 4627 | 290 | 6464 | 492.01 | 443 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF617LOZ.bed.gz | 100.98 KB | 87c5be202030d837a57bdbf020827293 |
| ENCFF617LOZ.tabix.bed.gz | 50.77 KB | 3f256368263d1850efc0ef5a78d87c74 |
| ENCFF617LOZ.tabix.bed.gz.tbi | 49.07 KB | 8fd054e1d58c77ff2a56ea413c68f34c |
| genomic_resource.yaml | 2.58 KB | aeee03fa45f6bde460d2ea6043ff53d6 |
| statistics/ |
