Histone_ChIP-seq_ENCSR366QMB
Histone_ChIP-seq ENCSR366QMB [biosample_summary="Homo sapiens SK-N-SH" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR366QMB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR366QMB [biosamplesummary="Homo sapiens SK-N-SH" and target="H2AFZ"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN150FBW|/analyses/ENCAN150FBW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF441RNP|/files/ENCFF441RNP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12505929 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF441RNP|/files/ENCFF441RNP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF441RNP|/files/ENCFF441RNP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR366QMB | float |
Histone_ChIP-seq_ENCSR366QMB |
Histone_ChIP-seq ENCSR366QMB [biosample_summary="Homo sapiens SK-N-SH" and target="H2AFZ"]
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[1.65, 19.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF066ZAG.bed.gz | 2.15 MB | 26d5793b41fd139fdab50ea793f5f8fb |
| ENCFF066ZAG.bed.gz.dvc | 101.0 B | e088b3ce9dc4cf86fe00c00f6438c21e |
| ENCFF066ZAG.tabix.bed.gz | 976.54 KB | 3a0868e45422496425c4e9f94af210a6 |
| ENCFF066ZAG.tabix.bed.gz.dvc | 106.0 B | c00137024467bb6cff22dad0f56c1ad8 |
| ENCFF066ZAG.tabix.bed.gz.tbi | 358.74 KB | 5a806378e08484a0d1e66cfd67b30e71 |
| ENCFF066ZAG.tabix.bed.gz.tbi.dvc | 110.0 B | b2d231d8d050fea3934914cc53d90c46 |
| genomic_resource.yaml | 3.16 KB | e8cc85471c8d3fcdebd11dc8f459308f |
| genomic_resource_original.yaml | 3.05 KB | 6c823aad72e5117b73b904aded9ba238 |
| statistics/ |