Resource

Id Histone_ChIP-seq/ENCSR363SSIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR363SSI [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR363SSI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0014455/
  • biosample_summary: Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)
  • date_created: 2015-09-15T19:52:46.953151+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR363SSI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years) nuclear fraction
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR363SSI float

Histone_ChIP-seq_ENCSR363SSI
Histone_ChIP-seq ENCSR363SSI [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR363SSI [1.84, 25.8]
n
44,823,469
mean
5.96
sd
2.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 448234691.39% 70325
chr1 2649523 1.06% 4295
chr1_KI270709v1_random 2373 3.55% 4
chr1_KI270712v1_random 735 0.42% 1
chr2 2954298 1.22% 5014
chr2_KI270716v1_random 1301 0.85% 3
chr3 2279396 1.15% 3937
chr4 2417431 1.27% 4035
chr4_GL000008v2_random 4414 2.10% 1
chr5 2901237 1.60% 4570
chr5_GL000208v1_random 524 0.57% 2
chr6 1917712 1.12% 3342
chr7 2890607 1.81% 4592
chr8 2237577 1.54% 3624
chr9 1507469 1.09% 2400
chr9_KI270719v1_random 790 0.45% 2
chr9_KI270720v1_random 674 1.73% 1
chr10 2237078 1.67% 3431
chr11 1962005 1.45% 3205
chr12 2305752 1.73% 3402
chr13 1074830 0.94% 1871
chr14 1126537 1.05% 1855
chr14_GL000225v1_random 25729 12.18% 35
chr14_KI270722v1_random 11994 6.18% 17
chr15 1188565 1.17% 1794
chr16 1549204 1.71% 2295
chr17 840656 1.01% 1344
chr17_GL000205v2_random 2467 1.33% 4
chr17_KI270729v1_random 45078 16.05% 39
chr17_KI270730v1_random 16476 14.64% 17
chr18 926102 1.15% 1565
chr19 4181966 7.13% 4445
chr20 955133 1.48% 1443
chr21 597696 1.28% 856
chr22 495728 0.98% 746
chr22_KI270732v1_random 1374 3.31% 3
chr22_KI270733v1_random 578 0.32% 2
chr22_KI270735v1_random 2838 6.63% 4
chr22_KI270736v1_random 13258 7.29% 9
chr22_KI270738v1_random 3322 3.34% 9
chrUn_GL000216v2 43912 24.86% 37
chrUn_GL000219v1 2182 1.22% 5
chrUn_GL000224v1 5853 3.26% 7
chrUn_KI270429v1 500 36.74% 1
chrUn_KI270435v1 748 0.80% 2
chrUn_KI270438v1 25654 22.80% 31
chrUn_KI270442v1 80058 20.42% 68
chrUn_KI270448v1 319 3.99% 1
chrUn_KI270466v1 519 42.09% 1
chrUn_KI270467v1 1598 40.77% 1
chrUn_KI270468v1 236 5.82% 1
chrUn_KI270510v1 246 10.19% 1
chrUn_KI270511v1 223 2.74% 1
chrUn_KI270512v1 1447 6.38% 2
chrUn_KI270517v1 376 11.56% 1
chrUn_KI270519v1 2041 1.48% 2
chrUn_KI270522v1 331 5.83% 1
chrUn_KI270538v1 710 0.78% 2
chrUn_KI270587v1 393 13.24% 1
chrUn_KI270589v1 3073 6.91% 1
chrUn_KI270590v1 464 9.90% 1
chrUn_KI270591v1 1163 20.07% 2
chrUn_KI270744v1 1885 1.12% 2
chrUn_KI270746v1 984 1.48% 1
chrUn_KI270751v1 1116 0.74% 1
chrUn_KI270756v1 5505 6.92% 7
chrUn_KI270757v1 4472 6.28% 6
chrX 3288610 2.11% 5912
chrY 18424 0.03% 12
3298 contigs with no values (124614798 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70325 200 39340 637.38 491
global segment-length histogram

Files

Filename Size md5
ENCFF162FLG.bed.gz 1.3 MB 236a410f536d432d663ac07db5f7e2c3
ENCFF162FLG.tabix.bed.gz 678.2 KB 5ebbce63364c8cd0914bc6cc336fbd7c
ENCFF162FLG.tabix.bed.gz.tbi 297.14 KB a509f928c0f1fe9effcb6bf8451df5e5
genomic_resource.yaml 2.16 KB 09a587d4c688ed1dda447ce4543905e8
statistics/