Histone_ChIP-seq_ENCSR360UUM
Histone_ChIP-seq ENCSR360UUM [biosample_summary="Homo sapiens tibial artery tissue female adult (51 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR360UUM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR360UUM [biosamplesummary="Homo sapiens tibial artery tissue female adult (51 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN051YBT|/analyses/ENCAN051YBT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN051YBT|/analyses/ENCAN051YBT/} has in progress subobject document {73914d1f-49b6-4bd7-adf3-bae86c947f92|/documents/73914d1f-49b6-4bd7-adf3-bae86c947f92/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF852ADS|/files/ENCFF852ADS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF852ADS|/files/ENCFF852ADS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR360UUM | float |
Histone_ChIP-seq_ENCSR360UUM |
Histone_ChIP-seq ENCSR360UUM [biosample_summary="Homo sapiens tibial artery tissue female adult (51 years)" and target="H3K36me3"]
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[1.61, 20.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF976LEF.bed.gz | 2.07 MB | 7fba001bac807c445b8deffb3634328b |
| ENCFF976LEF.bed.gz.dvc | 101.0 B | 929ea560e9d158c7c39dd066eff5e23c |
| ENCFF976LEF.tabix.bed.gz | 995.18 KB | c067d7de13d0d0cc16ce467592dd567d |
| ENCFF976LEF.tabix.bed.gz.dvc | 107.0 B | e9b3d71578e8248de9eac4c98fd871c1 |
| ENCFF976LEF.tabix.bed.gz.tbi | 155.42 KB | 57fa201b809c92f9d101a4419ab476e5 |
| ENCFF976LEF.tabix.bed.gz.tbi.dvc | 110.0 B | d544bbf149575ad7caa207bd8e2b741f |
| genomic_resource.yaml | 3.0 KB | 99ab6c44a526ac309f2a4bd372914622 |
| genomic_resource_original.yaml | 2.85 KB | daef7722a631e57a549c4c2fa2d9bc34 |
| statistics/ |