Resource

Id Histone_ChIP-seq/ENCSR359JHUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR359JHU [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR359JHU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001407/
  • biosample_summary: Homo sapiens germinal matrix tissue male embryo (20 weeks)
  • date_created: 2015-09-15T20:27:12.695857+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR359JHU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (20 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR359JHU float

Histone_ChIP-seq_ENCSR359JHU
Histone_ChIP-seq ENCSR359JHU [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR359JHU [1.81, 18]
n
72,965,531
mean
5.81
sd
2.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 729655312.27% 87679
chr1 4607363 1.85% 5820
chr2 5114813 2.11% 6525
chr3 4226989 2.13% 5532
chr4 4176085 2.20% 5444
chr5 4320573 2.38% 5255
chr6 3704474 2.17% 4936
chr7 4837128 3.04% 5528
chr8 4061844 2.80% 4547
chr9 2644810 1.91% 3328
chr10 3161783 2.36% 3918
chr11 3439953 2.55% 4283
chr12 3811079 2.86% 4157
chr13 2274727 1.99% 2937
chr14 2736858 2.56% 3424
chr15 2151018 2.11% 2544
chr16 2212013 2.45% 2239
chr17 1614239 1.94% 1832
chr18 1650356 2.05% 2175
chr19 6159062 10.51% 4485
chr20 1214752 1.88% 1645
chr21 1379053 2.95% 1633
chr22 1036378 2.04% 1272
chrX 1794874 1.15% 3018
chrY 635307 1.11% 1202
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87679 205 97279 832.19 590
global segment-length histogram

Files

Filename Size md5
ENCFF045EPL.bed.gz 1.59 MB 8397c8d195adffc4f763f017584a5c7b
ENCFF045EPL.tabix.bed.gz 840.57 KB f5002a70c121f4dd0676acf2a2af3c58
ENCFF045EPL.tabix.bed.gz.tbi 317.82 KB 640b0f4b1ec32c9db2623bfa6c202b1a
genomic_resource.yaml 1.51 KB cf7c697841715d89203ac414e317b540
statistics/