Resource

Id Histone_ChIP-seq/ENCSR357HANcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR357HAN [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K79me1"]
Description
Labels
  • accession: ENCSR357HAN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-10-01T07:16:11.168097+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR357HAN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K79me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR357HAN float

Histone_ChIP-seq_ENCSR357HAN
Histone_ChIP-seq ENCSR357HAN [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K79me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR357HAN [1.79, 9.06]
n
23,477,419
mean
3.64
sd
0.733

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 234774190.73% 82912
chr1 2244596 0.90% 7959
chr2 1766533 0.73% 6294
chr3 1418949 0.72% 5148
chr4 874952 0.46% 3345
chr5 1143568 0.63% 4159
chr6 1165820 0.68% 4315
chr7 1174931 0.74% 4313
chr8 1027932 0.71% 3708
chr9 1168633 0.84% 3915
chr10 1127623 0.84% 4090
chr11 1163377 0.86% 4038
chr12 1011075 0.76% 3722
chr13 561412 0.49% 2031
chr14 732939 0.68% 2704
chr15 841727 0.83% 2898
chr16 1105187 1.22% 3731
chr17 1229615 1.48% 4179
chr18 431542 0.54% 1673
chr19 1319409 2.25% 4123
chr20 839616 1.30% 2753
chr21 292727 0.63% 1027
chr22 783187 1.54% 2583
chrX 50868 0.03% 197
chrY 1201 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82912 125 2510 283.16 231
global segment-length histogram

Files

Filename Size md5
ENCFF457WXA.bed.gz 1.47 MB 430f4bdc46397e8bd890f9d14f13a61e
ENCFF457WXA.tabix.bed.gz 809.76 KB d16bbad00882b00ca0bd1d6351f520e5
ENCFF457WXA.tabix.bed.gz.tbi 153.45 KB f0e60ef74efe2808d4c1e933700e4ab2
genomic_resource.yaml 1.69 KB c28935c42ad2e835fb3f5dbb47718733
statistics/