Resource

Id Histone_ChIP-seq/ENCSR354ZUGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR354ZUG [biosample_summary="Homo sapiens uterus tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR354ZUG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000995/
  • biosample_summary: Homo sapiens uterus tissue female adult (53 years)
  • date_created: 2017-12-06T21:14:53.023399+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR354ZUG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR354ZUG float

Histone_ChIP-seq_ENCSR354ZUG
Histone_ChIP-seq ENCSR354ZUG [biosample_summary="Homo sapiens uterus tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR354ZUG [1.87, 37]
n
38,158,190
mean
16.7
sd
7.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 381581901.19% 23990
chr1 3786047 1.52% 2383
chr2 2670615 1.10% 1610
chr3 2229170 1.12% 1366
chr4 1610948 0.85% 997
chr5 1749487 0.96% 1038
chr6 2234681 1.31% 1368
chr7 1896678 1.19% 1190
chr8 1409185 0.97% 899
chr9 1599105 1.16% 1064
chr10 1644876 1.23% 1025
chr11 2067097 1.53% 1244
chr12 2084032 1.56% 1248
chr13 767975 0.67% 484
chr14 1237173 1.16% 766
chr15 1268810 1.24% 774
chr16 1418021 1.57% 954
chr17 2117325 2.54% 1385
chr18 663718 0.83% 426
chr19 2312464 3.94% 1567
chr20 920601 1.43% 602
chr21 377982 0.81% 258
chr22 846100 1.66% 538
chrX 1246100 0.80% 804
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23990 198 19505 1590.59 1377
global segment-length histogram

Files

Filename Size md5
ENCFF640VNF.bed.gz 671.68 KB 6d2a9970fb7ba2b7854c0f98bb6948b5
ENCFF640VNF.tabix.bed.gz 283.46 KB 560854e58e79812bf58600403eaa46c6
ENCFF640VNF.tabix.bed.gz.tbi 153.83 KB c7df142859ca94f06f6feedb5996b2fe
genomic_resource.yaml 1.71 KB 3b79ab05dba2557df697d286040945a2
statistics/