Resource
| Id | Histone_ChIP-seq/ENCSR353LBX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR353LBX [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN169VLT|/analyses/ENCAN169VLT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF775AJC|/files/ENCFF775AJC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19791295 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR353LBX | float |
Histone_ChIP-seq_ENCSR353LBX |
Histone_ChIP-seq ENCSR353LBX [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K9me3"]
|
 |
[1.7, 56.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 62169149 | 1.93% | 130097 |
| chr1 | 3094193 | 1.24% | 6784 |
| chr2 | 3414365 | 1.41% | 8004 |
| chr3 | 2379164 | 1.20% | 5774 |
| chr4 | 3076609 | 1.62% | 6959 |
| chr5 | 4279645 | 2.36% | 9313 |
| chr6 | 2350634 | 1.38% | 5652 |
| chr7 | 5341070 | 3.35% | 10318 |
| chr8 | 3563737 | 2.46% | 7174 |
| chr9 | 1835210 | 1.33% | 4297 |
| chr10 | 3226942 | 2.41% | 6726 |
| chr11 | 2437910 | 1.80% | 5598 |
| chr12 | 2745574 | 2.06% | 5740 |
| chr13 | 1525024 | 1.33% | 3648 |
| chr14 | 1948998 | 1.82% | 4265 |
| chr15 | 1754383 | 1.72% | 3440 |
| chr16 | 2712812 | 3.00% | 5458 |
| chr17 | 1513004 | 1.82% | 3135 |
| chr18 | 1647641 | 2.05% | 3866 |
| chr19 | 6878232 | 11.73% | 10631 |
| chr20 | 1515029 | 2.35% | 3098 |
| chr21 | 2104961 | 4.51% | 4013 |
| chr22 | 1064532 | 2.09% | 1874 |
| chrM | 1203 | 7.26% | 4 |
| chrX | 1231461 | 0.79% | 3037 |
| chrY | 526816 | 0.92% | 1289 |
| 3341 contigs with no values (129060516 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 130097 | 140 | 38713 | 477.87 | 358 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF849GBJ.bed.gz | 2.52 MB | 88eeddefd1e6f323c0b177670bd4ef6d |
| ENCFF849GBJ.tabix.bed.gz | 1.22 MB | 46c4ddf6ba95ac9efb90199d8180b0d3 |
| ENCFF849GBJ.tabix.bed.gz.tbi | 378.91 KB | 4d927a8ca2bafad4cca8c7cdc1370116 |
| genomic_resource.yaml | 1.95 KB | 1ace80ea52595e718f06fa1bdddeb8a8 |
| statistics/ |