Histone_ChIP-seq_ENCSR352UID
Histone_ChIP-seq ENCSR352UID [biosample_summary="Homo sapiens iPS-20b" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR352UID |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR352UID [biosamplesummary="Homo sapiens iPS-20b" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN342SVS|/analyses/ENCAN342SVS/} has in progress subobject document {23b554ea-94fd-49b0-ade9-9a48d6d48045|/documents/23b554ea-94fd-49b0-ade9-9a48d6d48045/} audit_internal_action: Released analysis {ENCAN342SVS|/analyses/ENCAN342SVS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF790XUK|/files/ENCFF790XUK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 23253539 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF255ECT|/files/ENCFF255ECT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21842361 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF790XUK|/files/ENCFF790XUK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF790XUK|/files/ENCFF790XUK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR352UID | float |
Histone_ChIP-seq_ENCSR352UID |
Histone_ChIP-seq ENCSR352UID [biosample_summary="Homo sapiens iPS-20b" and target="H3K27me3"]
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[1.64, 97.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF248UOT.bed.gz | 963.02 KB | d9fe42929cb171aca71fa15b46bee7ef |
| ENCFF248UOT.bed.gz.dvc | 100.0 B | 94972c8c8494bc1769c9261e4902191f |
| ENCFF248UOT.tabix.bed.gz | 433.49 KB | addac0139d22418e99fc43a10830d528 |
| ENCFF248UOT.tabix.bed.gz.dvc | 106.0 B | 470af879580b8fea831e3577afd0409f |
| ENCFF248UOT.tabix.bed.gz.tbi | 139.42 KB | 28cf8cf98188a939779d0feb81449d25 |
| ENCFF248UOT.tabix.bed.gz.tbi.dvc | 110.0 B | af8ff14ec24896a3dfea494540c67c4e |
| genomic_resource.yaml | 3.93 KB | 9e1a549be6ad3122c13448b20a1fbd22 |
| genomic_resource_original.yaml | 3.82 KB | 76fa6ec4c9d2eabd3021696daae843da |
| statistics/ |