Histone_ChIP-seq_ENCSR351SZH
Histone_ChIP-seq ENCSR351SZH [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K4me1"]
×
| Id: | Histone_ChIP-seq/ENCSR351SZH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR351SZH [biosamplesummary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN253JXE|/analyses/ENCAN253JXE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF660XBY|/files/ENCFF660XBY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 20479157 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF660XBY|/files/ENCFF660XBY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF660XBY|/files/ENCFF660XBY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.18. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR351SZH | float |
Histone_ChIP-seq_ENCSR351SZH |
Histone_ChIP-seq ENCSR351SZH [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K4me1"]
|
|
[1.83, 24.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF269MSP.bed.gz | 1.58 MB | 883d2761507d377991d33690b0dc5fb6 |
| ENCFF269MSP.bed.gz.dvc | 101.0 B | c568a6d782f12c3bff8778d3fb8c46f7 |
| ENCFF269MSP.tabix.bed.gz | 752.59 KB | 70a564fe14e4b79ed17a1734f61d69c5 |
| ENCFF269MSP.tabix.bed.gz.dvc | 106.0 B | 5185b24c27ac802b33671b834037a9bc |
| ENCFF269MSP.tabix.bed.gz.tbi | 199.1 KB | c1fc4c97f96bed5c46128da5cf181d89 |
| ENCFF269MSP.tabix.bed.gz.tbi.dvc | 110.0 B | c220b231bde67221d019b838da2842e8 |
| genomic_resource.yaml | 3.37 KB | 737e11802dec74bfddbf8caf00251464 |
| genomic_resource_original.yaml | 3.22 KB | 0ddecbcb10c26c0010637976ad6a47ce |
| statistics/ |