Resource
| Id | Histone_ChIP-seq/ENCSR351DLF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR351DLF [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (31 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN930RMC|/analyses/ENCAN930RMC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted unfiltered alignments file {ENCFF644GNR|/files/ENCFF644GNR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 44560266 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR351DLF | float |
Histone_ChIP-seq_ENCSR351DLF |
Histone_ChIP-seq ENCSR351DLF [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K9me3"]
|
 |
[1.64, 13] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10291408 | 0.32% | 30968 |
| chr1 | 527001 | 0.21% | 1744 |
| chr2 | 522179 | 0.22% | 1752 |
| chr3 | 393196 | 0.20% | 1322 |
| chr4 | 468944 | 0.25% | 1543 |
| chr5 | 674541 | 0.37% | 1987 |
| chr6 | 311364 | 0.18% | 1102 |
| chr7 | 574496 | 0.36% | 1894 |
| chr8 | 353982 | 0.24% | 1206 |
| chr9 | 311204 | 0.22% | 959 |
| chr10 | 445158 | 0.33% | 1381 |
| chr11 | 275793 | 0.20% | 1015 |
| chr12 | 475715 | 0.36% | 1370 |
| chr13 | 165068 | 0.14% | 614 |
| chr14 | 150285 | 0.14% | 575 |
| chr15 | 245527 | 0.24% | 707 |
| chr16 | 417175 | 0.46% | 1210 |
| chr17 | 171483 | 0.21% | 556 |
| chr18 | 149464 | 0.19% | 522 |
| chr19 | 2461889 | 4.20% | 5647 |
| chr20 | 200249 | 0.31% | 639 |
| chr21 | 173806 | 0.37% | 420 |
| chr22 | 85023 | 0.17% | 285 |
| chrX | 714207 | 0.46% | 2468 |
| chrY | 23659 | 0.04% | 50 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30968 | 140 | 13346 | 332.32 | 248 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF181IUT.bed.gz | 524.17 KB | d1cf9e96621474504b1f869ec6b05d50 |
| ENCFF181IUT.tabix.bed.gz | 285.8 KB | fa03a244d89d6ca9c021495239ce562b |
| ENCFF181IUT.tabix.bed.gz.tbi | 136.55 KB | 77474f0ea2770059b84dadab926ecfc9 |
| genomic_resource.yaml | 1.97 KB | 9dcef1bb233d2930ac66d83982bae8fb |
| statistics/ |