Histone_ChIP-seq_ENCSR350RYG
Histone_ChIP-seq ENCSR350RYG [biosample_summary="Homo sapiens DOHH2" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR350RYG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR350RYG [biosamplesummary="Homo sapiens DOHH2" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN646WSY|/analyses/ENCAN646WSY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN646WSY|/analyses/ENCAN646WSY/} has in progress subobject document {5b4d26ea-963d-4140-8af1-4bb622f57387|/documents/5b4d26ea-963d-4140-8af1-4bb622f57387/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF578YVW|/files/ENCFF578YVW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF578YVW|/files/ENCFF578YVW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.51. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF073QOG|/files/ENCFF073QOG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF073QOG|/files/ENCFF073QOG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR350RYG | float |
Histone_ChIP-seq_ENCSR350RYG |
Histone_ChIP-seq ENCSR350RYG [biosample_summary="Homo sapiens DOHH2" and target="H3K27me3"]
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[1.65, 14.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF512UFS.bed.gz | 1.98 MB | e57cd58d1f699be8ebe197dd6c79f60b |
| ENCFF512UFS.bed.gz.dvc | 101.0 B | e7cac144981cf52a7e479e4a00a5a65e |
| ENCFF512UFS.tabix.bed.gz | 1014.63 KB | 39f3ac6ea24ad65a641ce769b341496f |
| ENCFF512UFS.tabix.bed.gz.dvc | 107.0 B | de1435b270e861d47ee8b1c9e18dcc24 |
| ENCFF512UFS.tabix.bed.gz.tbi | 243.06 KB | 05ce1585c54fe3d781fc1d84fee0ffae |
| ENCFF512UFS.tabix.bed.gz.tbi.dvc | 110.0 B | 195071368d4e4b96c2c8fd330fda6aff |
| genomic_resource.yaml | 4.22 KB | f25905d39cdc5453ef825da22b0d846e |
| genomic_resource_original.yaml | 4.11 KB | b6aeec34e1594e7aa569b1be5ba46f83 |
| statistics/ |