Resource
| Id | Histone_ChIP-seq/ENCSR350JZR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR350JZR [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN405QSL|/analyses/ENCAN405QSL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF887XWW|/files/ENCFF887XWW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR350JZR | float |
Histone_ChIP-seq_ENCSR350JZR |
Histone_ChIP-seq ENCSR350JZR [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"]
|
 |
[1.93, 70.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43384356 | 1.35% | 40426 |
| chr1 | 4229943 | 1.70% | 3876 |
| chr1_KI270712v1_random | 3960 | 2.25% | 8 |
| chr1_KI270713v1_random | 868 | 2.13% | 2 |
| chr2 | 2757956 | 1.14% | 2413 |
| chr3 | 2207640 | 1.11% | 1850 |
| chr4 | 1506658 | 0.79% | 1198 |
| chr5 | 1779195 | 0.98% | 1427 |
| chr6 | 2330911 | 1.36% | 1879 |
| chr7 | 1923749 | 1.21% | 1763 |
| chr8 | 1558850 | 1.07% | 1370 |
| chr9 | 1829182 | 1.32% | 1763 |
| chr9_KI270717v1_random | 223 | 0.56% | 1 |
| chr10 | 1686146 | 1.26% | 1457 |
| chr11 | 2523658 | 1.87% | 2374 |
| chr12 | 2254383 | 1.69% | 1937 |
| chr13 | 781359 | 0.68% | 654 |
| chr14 | 1333388 | 1.25% | 1172 |
| chr14_GL000194v1_random | 473 | 0.25% | 2 |
| chr15 | 1398535 | 1.37% | 1210 |
| chr16 | 2070155 | 2.29% | 2270 |
| chr16_KI270728v1_random | 223 | 0.01% | 1 |
| chr17 | 3027373 | 3.64% | 3177 |
| chr17_GL000205v2_random | 1705 | 0.92% | 2 |
| chr18 | 663361 | 0.83% | 566 |
| chr19 | 3718762 | 6.34% | 4331 |
| chr20 | 1111792 | 1.73% | 1096 |
| chr21 | 374506 | 0.80% | 382 |
| chr22 | 1113479 | 2.19% | 1247 |
| chr22_KI270733v1_random | 1050 | 0.58% | 4 |
| chrUn_GL000195v1 | 1473 | 0.81% | 4 |
| chrUn_GL000214v1 | 208 | 0.15% | 1 |
| chrUn_GL000218v1 | 207 | 0.13% | 1 |
| chrUn_GL000219v1 | 5922 | 3.30% | 3 |
| chrUn_GL000220v1 | 508 | 0.31% | 2 |
| chrX | 1151432 | 0.74% | 957 |
| chrY | 35123 | 0.06% | 26 |
| 3330 contigs with no values (125567883 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 40426 | 180 | 20053 | 1073.18 | 620 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF931MLQ.bed.gz | 927.27 KB | 63d6bf4f08752cb5f28f0bb81cbd11e8 |
| ENCFF931MLQ.tabix.bed.gz | 424.64 KB | 819493eb06d3bb07683976c34a8c2081 |
| ENCFF931MLQ.tabix.bed.gz.tbi | 177.47 KB | 52a2c2e51e38747e141544a916cb3bce |
| genomic_resource.yaml | 2.11 KB | 23067d5ca003483eb8eabd7cfbd4766e |
| statistics/ |