Histone_ChIP-seq_ENCSR350JZR
Histone_ChIP-seq ENCSR350JZR [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR350JZR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR350JZR [biosamplesummary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN405QSL|/analyses/ENCAN405QSL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF887XWW|/files/ENCFF887XWW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR350JZR | float |
Histone_ChIP-seq_ENCSR350JZR |
Histone_ChIP-seq ENCSR350JZR [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me3"]
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[1.93, 70.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF931MLQ.bed.gz | 927.27 KB | 63d6bf4f08752cb5f28f0bb81cbd11e8 |
| ENCFF931MLQ.bed.gz.dvc | 100.0 B | 475dccd1640a2f7db46ad9aad8b8b7c2 |
| ENCFF931MLQ.tabix.bed.gz | 424.64 KB | 819493eb06d3bb07683976c34a8c2081 |
| ENCFF931MLQ.tabix.bed.gz.dvc | 106.0 B | 086c15fc2eba68ed30c270880da147b0 |
| ENCFF931MLQ.tabix.bed.gz.tbi | 177.47 KB | 52a2c2e51e38747e141544a916cb3bce |
| ENCFF931MLQ.tabix.bed.gz.tbi.dvc | 110.0 B | 4e57e62cbf288d3ffc27071bbf1dae72 |
| genomic_resource.yaml | 2.11 KB | 23067d5ca003483eb8eabd7cfbd4766e |
| genomic_resource_original.yaml | 1.98 KB | adb1cb857879a52339fc7227fd9a272e |
| statistics/ |