Resource
| Id | Histone_ChIP-seq/ENCSR350GZX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR350GZX [biosample_summary="Homo sapiens heart right ventricle tissue male adult (40 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN226SCR|/analyses/ENCAN226SCR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN226SCR|/analyses/ENCAN226SCR/} has in progress subobject document {e5bcd42f-64ec-4b30-b51d-f9fda6aced7c|/documents/e5bcd42f-64ec-4b30-b51d-f9fda6aced7c/} audit_warning: Processed alignments file {ENCFF006ZMC|/files/ENCFF006ZMC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 40763445 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR350GZX | float |
Histone_ChIP-seq_ENCSR350GZX |
Histone_ChIP-seq ENCSR350GZX [biosample_summary="Homo sapiens heart right ventricle tissue male adult (40 years)" and target="H3K4me1"]
|
 |
[1.68, 14.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 23295045 | 0.72% | 24273 |
| chr1 | 2294899 | 0.92% | 2426 |
| chr2 | 1631153 | 0.67% | 1709 |
| chr3 | 1318215 | 0.66% | 1304 |
| chr4 | 891342 | 0.47% | 888 |
| chr5 | 1113822 | 0.61% | 1104 |
| chr6 | 1271505 | 0.74% | 1276 |
| chr7 | 1107985 | 0.70% | 1169 |
| chr8 | 880758 | 0.61% | 898 |
| chr9 | 1036816 | 0.75% | 1098 |
| chr10 | 1066639 | 0.80% | 1101 |
| chr11 | 1318847 | 0.98% | 1315 |
| chr12 | 1207228 | 0.91% | 1253 |
| chr13 | 460320 | 0.40% | 483 |
| chr14 | 786732 | 0.73% | 828 |
| chr15 | 767097 | 0.75% | 802 |
| chr16 | 961911 | 1.06% | 989 |
| chr17 | 1455865 | 1.75% | 1532 |
| chr18 | 363358 | 0.45% | 375 |
| chr19 | 1505943 | 2.57% | 1645 |
| chr20 | 650700 | 1.01% | 692 |
| chr21 | 212112 | 0.45% | 219 |
| chr22 | 568253 | 1.12% | 622 |
| chrX | 423545 | 0.27% | 545 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24273 | 230 | 7351 | 959.71 | 832 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF947SST.bed.gz | 537.28 KB | 19e8182381fd98756bd2c90016e93502 |
| ENCFF947SST.tabix.bed.gz | 257.64 KB | 03b3dd9b46c75ad2ab1baee22523ead4 |
| ENCFF947SST.tabix.bed.gz.tbi | 136.44 KB | a5958c5ac2e66474822e90d643653090 |
| genomic_resource.yaml | 2.22 KB | e8233f98f873f176129dcfb43997ee39 |
| statistics/ |