Resource

Id Histone_ChIP-seq/ENCSR348FGTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR348FGT [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR348FGT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008952/
  • biosample_summary: Homo sapiens upper lobe of left lung tissue male adult (54 years)
  • date_created: 2017-12-06T21:17:58.491019+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR348FGT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR348FGT float

Histone_ChIP-seq_ENCSR348FGT
Histone_ChIP-seq ENCSR348FGT [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR348FGT [1.62, 11.7]
n
100,273,675
mean
4.37
sd
1.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1002736753.12% 107469
chr1 10420986 4.19% 10881
chr2 7779129 3.21% 8538
chr3 6515261 3.29% 7160
chr4 3474550 1.83% 4159
chr5 4769670 2.63% 5393
chr6 5423575 3.18% 6144
chr7 4536423 2.85% 5154
chr8 3979255 2.74% 4494
chr9 4573245 3.30% 4763
chr10 5071974 3.79% 5488
chr11 5593196 4.14% 5659
chr12 4982827 3.74% 5274
chr13 2050171 1.79% 2468
chr14 3490884 3.26% 3623
chr15 3770386 3.70% 3911
chr16 3985335 4.41% 4087
chr17 6066856 7.29% 5886
chr18 1705124 2.12% 2055
chr19 4516985 7.71% 4337
chr20 3120524 4.84% 3153
chr21 1112129 2.38% 1242
chr22 2732464 5.38% 2632
chrX 593120 0.38% 947
chrY 9606 0.02% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107469 210 23045 933.05 688
global segment-length histogram

Files

Filename Size md5
ENCFF572UTB.bed.gz 2.21 MB f924dddd1ac744f5d38df334b70df8a8
ENCFF572UTB.tabix.bed.gz 1.07 MB 849b6cb133e2b70d27e1129195c98853
ENCFF572UTB.tabix.bed.gz.tbi 295.9 KB f4557906ff8855949208673d13ffd4cd
genomic_resource.yaml 1.75 KB 9582c58735236b416f0c9f538d882016
statistics/