Resource

Id Histone_ChIP-seq/ENCSR345QKGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR345QKG [biosample_summary="Homo sapiens placental basal plate tissue male embryo (38 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR345QKG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0003013/
  • biosample_summary: Homo sapiens placental basal plate tissue male embryo (38 weeks)
  • date_created: 2017-03-22T16:17:01.031463+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR345QKG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (38 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR345QKG float

Histone_ChIP-seq_ENCSR345QKG
Histone_ChIP-seq ENCSR345QKG [biosample_summary="Homo sapiens placental basal plate tissue male embryo (38 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR345QKG [1.38, 26.1]
n
13,908,576
mean
9.15
sd
3.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 139085760.43% 15627
chr1 1376901 0.55% 1548
chr2 948744 0.39% 1062
chr3 840002 0.42% 927
chr4 579017 0.30% 639
chr5 705471 0.39% 762
chr6 844521 0.49% 935
chr7 700116 0.44% 780
chr8 518919 0.36% 570
chr9 581105 0.42% 647
chr10 562592 0.42% 624
chr11 754205 0.56% 830
chr12 725900 0.54% 805
chr13 265273 0.23% 305
chr14 471193 0.44% 540
chr14_KI270722v1_random 651 0.34% 1
chr15 442149 0.43% 494
chr16 574152 0.64% 647
chr16_KI270728v1_random 612 0.03% 1
chr17 799442 0.96% 915
chr17_GL000205v2_random 1377 0.74% 2
chr18 226223 0.28% 250
chr19 938477 1.60% 1096
chr20 338266 0.52% 375
chr21 129200 0.28% 153
chr22 300893 0.59% 349
chrUn_GL000219v1 1031 0.58% 2
chrUn_KI270337v1 702 62.62% 1
chrUn_KI270466v1 1024 83.05% 1
chrUn_KI270467v1 2042 52.09% 2
chrX 267698 0.17% 349
chrY 10678 0.02% 15
3335 contigs with no values (126639213 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 15627 210 5565 890.03 781
global segment-length histogram

Files

Filename Size md5
ENCFF756QQF.bed.gz 353.21 KB fd74e5b950aa91bbd851500d82674910
ENCFF756QQF.tabix.bed.gz 169.5 KB b9e1461759a175053e4a02a07e6749f3
ENCFF756QQF.tabix.bed.gz.tbi 105.09 KB 381c6aa0711b14e9bd571293f95a8f4a
genomic_resource.yaml 1.53 KB a10067aecd4a15da0856146f93b573aa
statistics/