Resource

Id Histone_ChIP-seq/ENCSR344YYPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR344YYP [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR344YYP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0018112/
  • biosample_summary: Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)
  • date_created: 2015-09-15T19:51:41.581101+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR344YYP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (50 years)
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR344YYP float

Histone_ChIP-seq_ENCSR344YYP
Histone_ChIP-seq ENCSR344YYP [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR344YYP [1.86, 32.1]
n
13,970,243
mean
7.46
sd
3.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 139702430.43% 26376
chr1 1470309 0.59% 2775
chr2 957686 0.40% 1826
chr3 814351 0.41% 1512
chr4 511567 0.27% 943
chr5 634974 0.35% 1174
chr6 794580 0.47% 1455
chr7 640947 0.40% 1217
chr8 469667 0.32% 906
chr9 601942 0.43% 1142
chr10 571187 0.43% 1093
chr11 828387 0.61% 1537
chr12 753207 0.57% 1361
chr13 249035 0.22% 447
chr14 495162 0.46% 893
chr15 455170 0.45% 839
chr16 578768 0.64% 1111
chr17 889848 1.07% 1724
chr18 191053 0.24% 371
chr19 966245 1.65% 1849
chr20 374007 0.58% 707
chr21 121624 0.26% 257
chr22 348944 0.69% 673
chrX 251583 0.16% 564
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26376 135 5780 529.66 446
global segment-length histogram

Files

Filename Size md5
ENCFF288UNM.bed.gz 561.13 KB 7532dc93e325020c09e6f1e32d8995bc
ENCFF288UNM.tabix.bed.gz 270.18 KB 8f7e2ed3cd481718cd14acb665709310
ENCFF288UNM.tabix.bed.gz.tbi 121.81 KB 9907af28b3d8acbc067593d74b9e4c8e
genomic_resource.yaml 1.56 KB f19a65944444c41dddea0abdb3f5648d
statistics/