Resource
| Id | Histone_ChIP-seq/ENCSR344WLV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR344WLV [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN450JMD|/analyses/ENCAN450JMD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF706GNN|/files/ENCFF706GNN/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 34373496 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR344WLV | float |
Histone_ChIP-seq_ENCSR344WLV |
Histone_ChIP-seq ENCSR344WLV [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me1"]
|
 |
[1.75, 17.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 103402346 | 3.21% | 131049 |
| chr1 | 10276430 | 4.13% | 12518 |
| chr2 | 8691390 | 3.59% | 11143 |
| chr3 | 6726821 | 3.39% | 8730 |
| chr4 | 3690004 | 1.94% | 5366 |
| chr5 | 5637397 | 3.11% | 7354 |
| chr6 | 5656638 | 3.31% | 7695 |
| chr7 | 4854719 | 3.05% | 6419 |
| chr8 | 4701779 | 3.24% | 6080 |
| chr9 | 5068375 | 3.66% | 6165 |
| chr10 | 5114882 | 3.82% | 6370 |
| chr11 | 5980012 | 4.43% | 7095 |
| chr12 | 5378737 | 4.04% | 6838 |
| chr13 | 2197885 | 1.92% | 3170 |
| chr14 | 3077733 | 2.88% | 3934 |
| chr15 | 3774695 | 3.70% | 4643 |
| chr16 | 3741480 | 4.14% | 4512 |
| chr17 | 5795909 | 6.96% | 6568 |
| chr18 | 1790839 | 2.23% | 2527 |
| chr19 | 4069750 | 6.94% | 4874 |
| chr20 | 2989580 | 4.64% | 3676 |
| chr21 | 1081375 | 2.32% | 1437 |
| chr22 | 2421638 | 4.77% | 2707 |
| chrX | 671549 | 0.43% | 1201 |
| chrY | 12729 | 0.02% | 27 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 131049 | 210 | 22069 | 789.04 | 582 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF184BXM.bed.gz | 2.8 MB | 1a70dbd53fd2af40d9ad16554783f963 |
| ENCFF184BXM.tabix.bed.gz | 1.34 MB | 7140cfb076c8998e5430c219ca66cc6a |
| ENCFF184BXM.tabix.bed.gz.tbi | 313.4 KB | c6c81635b74eb26aa724f149ec5db150 |
| genomic_resource.yaml | 1.96 KB | 46df05022490d992729fee7dfc0e32b7 |
| statistics/ |