Histone_ChIP-seq_ENCSR344TLI
Histone_ChIP-seq ENCSR344TLI [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR344TLI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR344TLI [biosamplesummary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (53 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN357LTK|/analyses/ENCAN357LTK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF188KCU|/files/ENCFF188KCU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17368420 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF188KCU|/files/ENCFF188KCU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF188KCU|/files/ENCFF188KCU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR344TLI | float |
Histone_ChIP-seq_ENCSR344TLI |
Histone_ChIP-seq ENCSR344TLI [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K4me3"]
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[1.24, 57.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF636VXP.bed.gz | 999.65 KB | c5a214849f80c88c4d5f7ab2dca2f44d |
| ENCFF636VXP.bed.gz.dvc | 101.0 B | d447631d89e51c5192a2419bc2ea8410 |
| ENCFF636VXP.tabix.bed.gz | 440.37 KB | 303091aa0651e39da09f274d30db9848 |
| ENCFF636VXP.tabix.bed.gz.dvc | 106.0 B | fa2180eb7b3571e577fad92747999b7f |
| ENCFF636VXP.tabix.bed.gz.tbi | 207.39 KB | b9bd0b3172d4d7743929e3bed848420d |
| ENCFF636VXP.tabix.bed.gz.tbi.dvc | 110.0 B | 566767dfd45770f39fab958386419cb2 |
| genomic_resource.yaml | 3.26 KB | ad88863ca8171472b9cace2e0fe56bd9 |
| genomic_resource_original.yaml | 3.11 KB | 5273c5f8ca296dd68605ab3ab0d73da2 |
| statistics/ |