Histone_ChIP-seq_ENCSR342FPJ
Histone_ChIP-seq ENCSR342FPJ [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR342FPJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR342FPJ [biosamplesummary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN493LEU|/analyses/ENCAN493LEU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF425DWG|/files/ENCFF425DWG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF425DWG|/files/ENCFF425DWG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR342FPJ | float |
Histone_ChIP-seq_ENCSR342FPJ |
Histone_ChIP-seq ENCSR342FPJ [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K4me3"]
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[1.67, 110] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF125JFQ.bed.gz | 775.71 KB | 1c7cedb5477180d7cc11f235d4d03db3 |
| ENCFF125JFQ.bed.gz.dvc | 100.0 B | 49dd5c2d0d06bb6cea7c96bc0f832650 |
| ENCFF125JFQ.tabix.bed.gz | 318.57 KB | eb30a9e686b255e55df3ebc1efa889c5 |
| ENCFF125JFQ.tabix.bed.gz.dvc | 106.0 B | caeeed247113833f167a43de50edf8df |
| ENCFF125JFQ.tabix.bed.gz.tbi | 172.28 KB | ee24f3bad2f744fcbec5cb4db675a279 |
| ENCFF125JFQ.tabix.bed.gz.tbi.dvc | 110.0 B | 6f2558a7571b1ccb35c55696cced1048 |
| genomic_resource.yaml | 2.75 KB | b27d2230b601385b107de2876cf78788 |
| genomic_resource_original.yaml | 2.62 KB | bb51f020a5564bf2ebd9cf9eb18e693d |
| statistics/ |