Resource

Id Histone_ChIP-seq/ENCSR340WQUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR340WQU [biosample_summary="Homo sapiens HeLa-S3" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR340WQU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002791/
  • biosample_summary: Homo sapiens HeLa-S3
  • date_created: 2014-10-24T16:23:52.861104+00:00
  • date_released: 2016-11-08
  • doi: 10.17989/ENCSR340WQU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR340WQU float

Histone_ChIP-seq_ENCSR340WQU
Histone_ChIP-seq ENCSR340WQU [biosample_summary="Homo sapiens HeLa-S3" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR340WQU [1.57, 51.6]
n
49,595,222
mean
20
sd
11.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 495952221.54% 33597
chr1 4948957 1.99% 3274
chr2 3287424 1.36% 2342
chr3 2867803 1.45% 1970
chr4 1832397 0.96% 1285
chr5 2478943 1.37% 1645
chr6 3001584 1.76% 1976
chr7 2327035 1.46% 1659
chr8 1938198 1.34% 1399
chr9 2189897 1.58% 1485
chr10 2218779 1.66% 1569
chr11 2623680 1.94% 1672
chr12 2773021 2.08% 1757
chr13 1021826 0.89% 745
chr14 1677473 1.57% 1091
chr15 1707227 1.67% 1150
chr16 1960651 2.17% 1307
chr17 2846756 3.42% 1820
chr18 924417 1.15% 685
chr19 2618300 4.47% 1726
chr20 1323823 2.05% 936
chr21 562013 1.20% 420
chr22 957721 1.88% 691
chrX 1507297 0.97% 993
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33597 225 16140 1476.18 996
global segment-length histogram

Files

Filename Size md5
ENCFF932ZNX.bed.gz 878.44 KB 3ea2c8c96e555a5aac783f0932216ff4
ENCFF932ZNX.tabix.bed.gz 381.19 KB 8daed05a38288762a40e65f11b69fa94
ENCFF932ZNX.tabix.bed.gz.tbi 179.83 KB 4b263c7ded0f4454af2d1ec4b07f33bb
genomic_resource.yaml 1.59 KB 08930beb1ae58583cfb535ad02d307d3
statistics/