Resource

Id Histone_ChIP-seq/ENCSR340OPIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR340OPI [biosample_summary="Homo sapiens small intestine tissue male child (3 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR340OPI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue male child (3 years)
  • date_created: 2015-09-16T19:17:30.645049+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR340OPI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR340OPI float

Histone_ChIP-seq_ENCSR340OPI
Histone_ChIP-seq ENCSR340OPI [biosample_summary="Homo sapiens small intestine tissue male child (3 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR340OPI [1.33, 13.1]
n
13,848,608
mean
4.9
sd
1.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 138486080.43% 38269
chr1 1348710 0.54% 3839
chr2 1121352 0.46% 2972
chr3 587119 0.30% 1686
chr4 547356 0.29% 1430
chr5 844748 0.47% 2340
chr6 838781 0.49% 2337
chr7 730171 0.46% 1874
chr8 602367 0.42% 1770
chr9 629746 0.46% 1690
chr10 837520 0.63% 2233
chr11 674069 0.50% 1901
chr12 684727 0.51% 1889
chr13 371760 0.33% 1045
chr14 409182 0.38% 1132
chr15 494528 0.48% 1428
chr16 389967 0.43% 1123
chr17 763635 0.92% 2010
chr18 249361 0.31% 791
chr19 626310 1.07% 1673
chr20 594064 0.92% 1655
chr21 143940 0.31% 395
chr22 253180 0.50% 745
chrX 104767 0.07% 306
chrY 1248 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38269 125 4185 361.88 280
global segment-length histogram

Files

Filename Size md5
ENCFF731TPA.bed.gz 765.4 KB 1ccc2cc429b20e1352caf656131c3778
ENCFF731TPA.tabix.bed.gz 376.43 KB 4bd17626a0c23165c858cd5e95280ad9
ENCFF731TPA.tabix.bed.gz.tbi 150.81 KB 34bc0a9738917692d0afd71631a7af95
genomic_resource.yaml 1.99 KB b513f18955cf686659c56cf582d0e293
statistics/