Resource

Id Histone_ChIP-seq/ENCSR339ZMJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR339ZMJ [biosample_summary="Homo sapiens PC-3" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR339ZMJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2014-02-20T04:37:41.520097+00:00
  • date_released: 2016-05-03
  • doi: 10.17989/ENCSR339ZMJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR339ZMJ float

Histone_ChIP-seq_ENCSR339ZMJ
Histone_ChIP-seq ENCSR339ZMJ [biosample_summary="Homo sapiens PC-3" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR339ZMJ [1.39, 6.42]
n
26,730,406
mean
2.99
sd
0.599

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 267304060.83% 38620
chr1 1468193 0.59% 2016
chr2 1659219 0.69% 2704
chr3 3274324 1.65% 5030
chr4 447030 0.24% 711
chr5 1486672 0.82% 2332
chr6 406337 0.24% 608
chr7 983691 0.62% 1628
chr8 3135952 2.16% 3990
chr9 192137 0.14% 330
chr10 957640 0.72% 1228
chr11 2325849 1.72% 3312
chr12 1114734 0.84% 1459
chr13 172965 0.15% 301
chr14 1167344 1.09% 1917
chr15 571763 0.56% 906
chr16 189307 0.21% 284
chr17 1091508 1.31% 1558
chr18 449846 0.56% 701
chr19 3011212 5.14% 3541
chr20 1385717 2.15% 2039
chr21 968863 2.07% 1503
chr22 106478 0.21% 179
chrX 163625 0.10% 343
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38620 205 14134 692.14 566
global segment-length histogram

Files

Filename Size md5
ENCFF022FXG.bed.gz 817.66 KB 39f9d39fc35367074ed4b6b0d495ba9f
ENCFF022FXG.tabix.bed.gz 392.37 KB ff6490716b2df9e5453ea85af4da9c08
ENCFF022FXG.tabix.bed.gz.tbi 134.62 KB 81678f98f7741c8173cc14d667636854
genomic_resource.yaml 1.58 KB a187dd09cf5261f39918e30bdb01cd80
statistics/