| Id: | Histone_ChIP-seq/ENCSR339TAQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR339TAQ [biosamplesummary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (87 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (87 years) with Alzheimer's disease, Cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN686STI|/analyses/ENCAN686STI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF002UFI|/files/ENCFF002UFI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF002UFI|/files/ENCFF002UFI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.40. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR339TAQ | float |
Histone_ChIP-seq_ENCSR339TAQ |
Histone_ChIP-seq ENCSR339TAQ [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (87 years)" and target="H3K4me3"]
|
 |
[1.95, 92.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF038YCT.bed.gz | 825.58 KB | 045d6c26c38e922409ea6cc8b54a1635 |
| ENCFF038YCT.bed.gz.dvc | 100.0 B | dcefc2c05b78c2c95bfda281aff4e45f |
| ENCFF038YCT.tabix.bed.gz | 364.43 KB | f6828e15d7845dc6a8e9c0896cd81bcf |
| ENCFF038YCT.tabix.bed.gz.dvc | 106.0 B | 9776899912793cece90721e27a69cf8f |
| ENCFF038YCT.tabix.bed.gz.tbi | 194.85 KB | ef13018a6d66da94b1c502c663d021be |
| ENCFF038YCT.tabix.bed.gz.tbi.dvc | 110.0 B | 7059f3a129fdde83231109870f52bcc8 |
| genomic_resource.yaml | 3.07 KB | 918d37bc7ef694372378607743b78955 |
| genomic_resource_original.yaml | 2.87 KB | b6db2f4cb04202c2ece40f23caec5048 |
| statistics/ |