Histone_ChIP-seq_ENCSR339PLH
Histone_ChIP-seq ENCSR339PLH [biosample_summary="Homo sapiens stomach smooth muscle tissue male adult (59 years)" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR339PLH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR339PLH [biosamplesummary="Homo sapiens stomach smooth muscle tissue male adult (59 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN264VIN|/analyses/ENCAN264VIN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF687XBV|/files/ENCFF687XBV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF687XBV|/files/ENCFF687XBV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR339PLH | float |
Histone_ChIP-seq_ENCSR339PLH |
Histone_ChIP-seq ENCSR339PLH [biosample_summary="Homo sapiens stomach smooth muscle tissue male adult (59 years)" and target="H3K9ac"]
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[1.8, 60.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF886ETH.bed.gz | 978.74 KB | 6cb3f188fe6448d8aba70060c443da96 |
| ENCFF886ETH.bed.gz.dvc | 101.0 B | 2e726802aa954b1f0dc59ea8803b41b5 |
| ENCFF886ETH.tabix.bed.gz | 443.11 KB | 94bef64d15d1fa81e2b949f43bf85cfe |
| ENCFF886ETH.tabix.bed.gz.dvc | 106.0 B | 8b826c0fe3584cc6138fd07dae680296 |
| ENCFF886ETH.tabix.bed.gz.tbi | 170.35 KB | 4f774aaa1377697db5fa7f88c15a7fff |
| ENCFF886ETH.tabix.bed.gz.tbi.dvc | 110.0 B | ac6828c324ee785725fc10d18d9d716e |
| genomic_resource.yaml | 2.79 KB | 3573fb488d8c1fcda14434cc11ed8569 |
| genomic_resource_original.yaml | 2.65 KB | 23332fe1230a580488da09c088961d0b |
| statistics/ |