Histone_ChIP-seq_ENCSR337LGY
Histone_ChIP-seq ENCSR337LGY [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR337LGY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR337LGY [biosamplesummary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN996OYC|/analyses/ENCAN996OYC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF355NMB|/files/ENCFF355NMB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF355NMB|/files/ENCFF355NMB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR337LGY | float |
Histone_ChIP-seq_ENCSR337LGY |
Histone_ChIP-seq ENCSR337LGY [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K27me3"]
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[1.72, 11.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF685CNW.bed.gz | 616.99 KB | e05b5ea38fc414a6e53323d5c047f001 |
| ENCFF685CNW.bed.gz.dvc | 100.0 B | 72754a3ce11ba400271848e23ff8e9ea |
| ENCFF685CNW.tabix.bed.gz | 323.7 KB | fa06baf27e0607fb10f66d9af0186610 |
| ENCFF685CNW.tabix.bed.gz.dvc | 106.0 B | bd9a7788c084564fe7204eb590e4ef48 |
| ENCFF685CNW.tabix.bed.gz.tbi | 116.99 KB | 20adf1f9af80ece8892837735bc798e0 |
| ENCFF685CNW.tabix.bed.gz.tbi.dvc | 110.0 B | 463cda02bdfa08d749ddd125ec0c53c2 |
| genomic_resource.yaml | 2.81 KB | 3e731864b021273ba6a959286d709a50 |
| genomic_resource_original.yaml | 2.66 KB | 8eb5489617b4359038389c73f622dd08 |
| statistics/ |