Resource
| Id | Histone_ChIP-seq/ENCSR337LGY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR337LGY [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN996OYC|/analyses/ENCAN996OYC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF355NMB|/files/ENCFF355NMB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF355NMB|/files/ENCFF355NMB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.92. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR337LGY | float |
Histone_ChIP-seq_ENCSR337LGY |
Histone_ChIP-seq ENCSR337LGY [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)" and target="H3K27me3"]
|
 |
[1.72, 11.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36763702 | 1.14% | 33416 |
| chr1 | 3550155 | 1.43% | 3401 |
| chr2 | 2568394 | 1.06% | 2238 |
| chr3 | 1250269 | 0.63% | 1139 |
| chr4 | 1416825 | 0.74% | 1211 |
| chr5 | 2110669 | 1.16% | 1782 |
| chr6 | 2262788 | 1.32% | 1817 |
| chr7 | 1821804 | 1.14% | 1481 |
| chr8 | 1615770 | 1.11% | 1470 |
| chr9 | 1566879 | 1.13% | 1401 |
| chr10 | 2014901 | 1.51% | 1790 |
| chr11 | 1772861 | 1.31% | 1717 |
| chr12 | 1933228 | 1.45% | 1851 |
| chr13 | 898078 | 0.79% | 748 |
| chr14 | 1152121 | 1.08% | 1076 |
| chr15 | 1197585 | 1.17% | 1166 |
| chr16 | 1171918 | 1.30% | 1146 |
| chr17 | 2313693 | 2.78% | 2059 |
| chr18 | 585711 | 0.73% | 592 |
| chr19 | 1978001 | 3.37% | 1785 |
| chr20 | 1940733 | 3.01% | 1836 |
| chr21 | 363438 | 0.78% | 347 |
| chr22 | 1134587 | 2.23% | 1225 |
| chrX | 143294 | 0.09% | 138 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 33416 | 225 | 37928 | 1100.18 | 725 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF685CNW.bed.gz | 616.99 KB | e05b5ea38fc414a6e53323d5c047f001 |
| ENCFF685CNW.tabix.bed.gz | 323.7 KB | fa06baf27e0607fb10f66d9af0186610 |
| ENCFF685CNW.tabix.bed.gz.tbi | 116.99 KB | 20adf1f9af80ece8892837735bc798e0 |
| genomic_resource.yaml | 2.81 KB | 3e731864b021273ba6a959286d709a50 |
| statistics/ |