Histone_ChIP-seq_ENCSR335YEH
Histone_ChIP-seq ENCSR335YEH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR335YEH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR335YEH [biosamplesummary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (71 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN613PFT|/analyses/ENCAN613PFT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF849IOW|/files/ENCFF849IOW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF849IOW|/files/ENCFF849IOW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR335YEH | float |
Histone_ChIP-seq_ENCSR335YEH |
Histone_ChIP-seq ENCSR335YEH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)" and target="H3K4me3"]
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[1.78, 78.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF695WNQ.bed.gz | 1.08 MB | 8d2854f15e857800e4c7a098b0cebae6 |
| ENCFF695WNQ.bed.gz.dvc | 101.0 B | 4f1fce47ac1b1bed38ba6097a0590ec3 |
| ENCFF695WNQ.tabix.bed.gz | 487.51 KB | 6734a87d9da72808512e80dda7554ab9 |
| ENCFF695WNQ.tabix.bed.gz.dvc | 106.0 B | c8030f1c43698c59ccb9900de583c5ac |
| ENCFF695WNQ.tabix.bed.gz.tbi | 233.56 KB | b0ebd1f8996647d2b133a2f2499093e6 |
| ENCFF695WNQ.tabix.bed.gz.tbi.dvc | 110.0 B | c6a1002ec9ae331d8482cdfb28afa526 |
| genomic_resource.yaml | 2.83 KB | 2cdabc3725e51f9a4853fee98dd2f4db |
| genomic_resource_original.yaml | 2.67 KB | 782bbedaefb1c47009a8bdf0d76b9857 |
| statistics/ |