Resource

Id Histone_ChIP-seq/ENCSR335LTZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR335LTZ [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR335LTZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (65 years)
  • date_created: 2017-09-13T18:33:28.738169+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR335LTZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (65 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR335LTZ float

Histone_ChIP-seq_ENCSR335LTZ
Histone_ChIP-seq ENCSR335LTZ [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR335LTZ [1.81, 23.2]
n
8,070,655
mean
5.51
sd
2.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80706550.25% 12233
chr1 510376 0.21% 930
chr2 637518 0.26% 929
chr3 568069 0.29% 804
chr4 171909 0.09% 320
chr5 448356 0.25% 645
chr6 523541 0.31% 741
chr7 453415 0.28% 675
chr8 353932 0.24% 521
chr9 199717 0.14% 352
chr10 408307 0.31% 593
chr11 300217 0.22% 510
chr12 537776 0.40% 749
chr13 80309 0.07% 138
chr14 371895 0.35% 512
chr15 149818 0.15% 263
chr16 367371 0.41% 564
chr17 564083 0.68% 832
chr18 164222 0.20% 241
chr19 630940 1.08% 939
chr20 308291 0.48% 399
chr21 49843 0.11% 84
chr22 106359 0.21% 198
chrX 163959 0.11% 293
chrY 432 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 12233 190 9656 659.74 564
global segment-length histogram

Files

Filename Size md5
ENCFF012JHM.bed.gz 268.09 KB dc9e5894115812c2137b7ea14c1ede1e
ENCFF012JHM.tabix.bed.gz 129.47 KB e60034ee6e6a9cafcd819b636eb2587e
ENCFF012JHM.tabix.bed.gz.tbi 85.15 KB e4df1bf4849004099ca41332de87a42e
genomic_resource.yaml 3.3 KB d439fd5fa977c52250aee73d04eb6131
statistics/