Histone_ChIP-seq_ENCSR334DRN
Histone_ChIP-seq ENCSR334DRN [biosample_summary="Homo sapiens skin epidermis tissue male adult (67 years)" and target="H3K27ac"]
×
| Id: | Histone_ChIP-seq/ENCSR334DRN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR334DRN [biosamplesummary="Homo sapiens skin epidermis tissue male adult (67 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (67 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN403FYQ|/analyses/ENCAN403FYQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN403FYQ|/analyses/ENCAN403FYQ/} has in progress subobject document {4c05ca7b-5119-4979-907f-b9d27c9fb68c|/documents/4c05ca7b-5119-4979-907f-b9d27c9fb68c/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF647VPO|/files/ENCFF647VPO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF647VPO|/files/ENCFF647VPO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.17. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR334DRN | float |
Histone_ChIP-seq_ENCSR334DRN |
Histone_ChIP-seq ENCSR334DRN [biosample_summary="Homo sapiens skin epidermis tissue male adult (67 years)" and target="H3K27ac"]
|
|
[1.75, 71.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF462XVH.bed.gz | 1.16 MB | 1f4f7b2193e81fcba686ccf28bbfaa3a |
| ENCFF462XVH.bed.gz.dvc | 101.0 B | 08e0379384bdb1976bc4c3b566b7180e |
| ENCFF462XVH.tabix.bed.gz | 532.22 KB | 8fc8baa67d0496b5c4846f8e31eb97fc |
| ENCFF462XVH.tabix.bed.gz.dvc | 106.0 B | 2dc8913601a882edc928e303ef0d55c3 |
| ENCFF462XVH.tabix.bed.gz.tbi | 187.31 KB | 742aa91064a3a350458c98567e49b3ae |
| ENCFF462XVH.tabix.bed.gz.tbi.dvc | 110.0 B | ef7cae5be327163f44c1b7c2a215c3e9 |
| genomic_resource.yaml | 2.99 KB | 5a0c901966a078c14f87f3e5684b990f |
| genomic_resource_original.yaml | 2.85 KB | ef0e9c1b41d88b9477a7e1e3d5d0c4a4 |
| statistics/ |