Histone_ChIP-seq_ENCSR333ZAR
Histone_ChIP-seq ENCSR333ZAR [biosample_summary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR333ZAR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR333ZAR [biosamplesummary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (30 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN051QBY|/analyses/ENCAN051QBY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF765TNY|/files/ENCFF765TNY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10291068 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF765TNY|/files/ENCFF765TNY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR333ZAR | float |
Histone_ChIP-seq_ENCSR333ZAR |
Histone_ChIP-seq ENCSR333ZAR [biosample_summary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K4me1"]
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[1.57, 11.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF190LIL.bed.gz | 713.4 KB | ba83362cda2e3e718655f4027a891605 |
| ENCFF190LIL.bed.gz.dvc | 100.0 B | 24f544f14627af55c1f65bb03018e916 |
| ENCFF190LIL.tabix.bed.gz | 361.39 KB | fca7b4345df269dcd5ae9c2d6a1b5217 |
| ENCFF190LIL.tabix.bed.gz.dvc | 106.0 B | 9fb757560e8a105b9b52a11b55a8e654 |
| ENCFF190LIL.tabix.bed.gz.tbi | 190.51 KB | 2ea4a6ccad9bb031222abee190edd559 |
| ENCFF190LIL.tabix.bed.gz.tbi.dvc | 110.0 B | a4c417d76347bcd1c4d1474c21b6a7d4 |
| genomic_resource.yaml | 2.63 KB | b6f6626a0e93a30137eff81d98d9a8d8 |
| genomic_resource_original.yaml | 2.49 KB | bf9e18f5736840a4a6efe32dc056d5e5 |
| statistics/ |