Resource

Id Histone_ChIP-seq/ENCSR333LVYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR333LVY [biosample_summary="Homo sapiens H9" and target="H2AK5ac"]
Description
Labels
  • accession: ENCSR333LVY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003045/
  • biosample_summary: Homo sapiens H9
  • date_created: 2015-10-01T07:16:24.613817+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR333LVY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AK5ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR333LVY float

Histone_ChIP-seq_ENCSR333LVY

Histone_ChIP-seq ENCSR333LVY [biosample_summary="Homo sapiens H9" and target="H2AK5ac"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR333LVY [1.73, 7.86]
n
1,523,913
mean
3.5
sd
0.739

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 15239130.05% 4884
chr1 124099 0.05% 399
chr2 112049 0.05% 360
chr3 109056 0.05% 360
chr4 79381 0.04% 260
chr5 77044 0.04% 247
chr6 104725 0.06% 338
chr7 95887 0.06% 304
chr8 71054 0.05% 230
chr9 59256 0.04% 196
chr10 83385 0.06% 271
chr11 72565 0.05% 229
chr12 76439 0.06% 246
chr13 38024 0.03% 132
chr14 47303 0.04% 150
chr15 44108 0.04% 134
chr16 37754 0.04% 126
chr17 36797 0.04% 116
chr18 45180 0.06% 140
chr19 36991 0.06% 117
chr20 41445 0.06% 130
chr21 14211 0.03% 44
chr22 36586 0.07% 103
chrX 80574 0.05% 252
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 4884 190 1521 312.02 274
global segment-length histogram

Files

Filename Size md5
ENCFF007QYP.bed.gz 98.7 KB 3cf11cca98892426b806da0b143573a9
ENCFF007QYP.tabix.bed.gz 51.54 KB 4326123e2fbe09358928f9f94d406405
ENCFF007QYP.tabix.bed.gz.tbi 44.13 KB d6125326ea1017fde987d8c9d3cdfaf3
genomic_resource.yaml 1.58 KB f8387e6ea899ebea92763ddf287a7169
statistics/