Resource
| Id | Histone_ChIP-seq/ENCSR330NKU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR330NKU [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN249JLO|/analyses/ENCAN249JLO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN249JLO|/analyses/ENCAN249JLO/} has in progress subobject document {25b27182-d3aa-49a0-8adf-d11488735249|/documents/25b27182-d3aa-49a0-8adf-d11488735249/} audit_not_compliant: Processed alignments file {ENCFF920RWA|/files/ENCFF920RWA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27882330 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR330NKU | float |
Histone_ChIP-seq_ENCSR330NKU |
Histone_ChIP-seq ENCSR330NKU [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K4me1"]
|
 |
[1.68, 21.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 87685309 | 2.73% | 121110 |
| chr1 | 9558411 | 3.84% | 12454 |
| chr2 | 6660111 | 2.75% | 9566 |
| chr3 | 5308052 | 2.68% | 7771 |
| chr4 | 3488130 | 1.83% | 5592 |
| chr5 | 4422374 | 2.44% | 6360 |
| chr6 | 5153979 | 3.02% | 7504 |
| chr7 | 3863689 | 2.42% | 5800 |
| chr8 | 3324873 | 2.29% | 4819 |
| chr9 | 4112701 | 2.97% | 5472 |
| chr10 | 4111661 | 3.07% | 5668 |
| chr11 | 5646758 | 4.18% | 7324 |
| chr12 | 4119043 | 3.09% | 5974 |
| chr13 | 1637866 | 1.43% | 2586 |
| chr14 | 3096670 | 2.89% | 4152 |
| chr15 | 2927490 | 2.87% | 3943 |
| chr16 | 3187966 | 3.53% | 4085 |
| chr17 | 5219216 | 6.27% | 6226 |
| chr18 | 1851710 | 2.30% | 2671 |
| chr19 | 3222510 | 5.50% | 4072 |
| chr20 | 2334443 | 3.62% | 3072 |
| chr21 | 982597 | 2.10% | 1304 |
| chr22 | 2249739 | 4.43% | 2755 |
| chrX | 1187349 | 0.76% | 1909 |
| chrY | 17971 | 0.03% | 31 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 121110 | 160 | 13438 | 724.01 | 546 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF173RZA.bed.gz | 2.58 MB | 050cade361d67ab2627d87e347dfb617 |
| ENCFF173RZA.tabix.bed.gz | 1.2 MB | 61361f3f3f3912edec30a9974e01f505 |
| ENCFF173RZA.tabix.bed.gz.tbi | 297.77 KB | 7b21e1d1c1903f2d906936566cc5bdf6 |
| genomic_resource.yaml | 2.22 KB | 0bf2c732e103c2b3b6546f2dba1e6def |
| statistics/ |