Histone_ChIP-seq_ENCSR329FXI
Histone_ChIP-seq ENCSR329FXI [biosample_summary="Homo sapiens skeletal muscle tissue tissue female adult (72 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR329FXI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR329FXI [biosamplesummary="Homo sapiens skeletal muscle tissue tissue female adult (72 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (72 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN250XCI|/analyses/ENCAN250XCI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF082LKM|/files/ENCFF082LKM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17834233 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF082LKM|/files/ENCFF082LKM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF082LKM|/files/ENCFF082LKM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.67. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR329FXI | float |
Histone_ChIP-seq_ENCSR329FXI |
Histone_ChIP-seq ENCSR329FXI [biosample_summary="Homo sapiens skeletal muscle tissue tissue female adult (72 years)" and target="H3K27ac"]
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[1.81, 123] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF216VYV.bed.gz | 1.48 MB | 54b8c5aa0fd202ba310c1c9e958ec89c |
| ENCFF216VYV.bed.gz.dvc | 101.0 B | 7ab870145342661154b2365559a7987e |
| ENCFF216VYV.tabix.bed.gz | 677.59 KB | 159ae95fa10641b7c1f4b3fe2b3dd56a |
| ENCFF216VYV.tabix.bed.gz.dvc | 106.0 B | 1e75fc6649c76a05958ee9ddb7ed8815 |
| ENCFF216VYV.tabix.bed.gz.tbi | 220.56 KB | 63f0559d07cf6c025c08cb82f832b318 |
| ENCFF216VYV.tabix.bed.gz.tbi.dvc | 110.0 B | bbf8db3b05744b8413e64c7bc996b954 |
| genomic_resource.yaml | 3.3 KB | 7916094c4c25fb5454fc57b33dfff202 |
| genomic_resource_original.yaml | 3.15 KB | dbbeeb0037ab973ef5fb786a6ea6e2be |
| statistics/ |