Resource

Id Histone_ChIP-seq/ENCSR328KRDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR328KRD [biosample_summary="Homo sapiens colonic mucosa tissue female adult (56 years)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR328KRD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000317/
  • biosample_summary: Homo sapiens colonic mucosa tissue female adult (56 years)
  • date_created: 2015-09-15T19:51:45.860379+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR328KRD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (56 years)
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR328KRD float

Histone_ChIP-seq_ENCSR328KRD
Histone_ChIP-seq ENCSR328KRD [biosample_summary="Homo sapiens colonic mucosa tissue female adult (56 years)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR328KRD [1.87, 44.8]
n
50,023,028
mean
10.7
sd
6.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 500230281.55% 49758
chr1 5428244 2.18% 5247
chr2 3415802 1.41% 3486
chr3 2675873 1.35% 2694
chr4 1705892 0.90% 1725
chr5 2318446 1.28% 2264
chr6 2701454 1.58% 2628
chr7 2200041 1.38% 2201
chr8 1668248 1.15% 1754
chr9 2205499 1.59% 2224
chr10 2222677 1.66% 2299
chr11 2906606 2.15% 2741
chr12 2634891 1.98% 2511
chr13 918504 0.80% 899
chr14 1827838 1.71% 1806
chr15 1761857 1.73% 1750
chr16 2103712 2.33% 2207
chr17 3448178 4.14% 3301
chr17_GL000205v2_random 1771 0.95% 2
chr18 780107 0.97% 789
chr19 2915205 4.97% 2831
chr20 1414181 2.19% 1482
chr21 544599 1.17% 579
chr22 1384185 2.72% 1368
chrUn_GL000195v1 364 0.20% 1
chrUn_GL000219v1 968 0.54% 2
chrX 837886 0.54% 967
3340 contigs with no values (185756815 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49758 250 19761 1005.33 715
global segment-length histogram

Files

Filename Size md5
ENCFF295OXS.bed.gz 1.02 MB 51992a0eeb4a9668d4b9af38e3e9d2ce
ENCFF295OXS.tabix.bed.gz 509.4 KB 6a417a023fc83a20ff2c7e92df2d61b2
ENCFF295OXS.tabix.bed.gz.tbi 177.34 KB 14010ffe769e9b5683f7c634b15a3102
genomic_resource.yaml 2.0 KB a785d755dbfe9bef2f826bc570e28520
statistics/