Histone_ChIP-seq_ENCSR328CWP
Histone_ChIP-seq ENCSR328CWP [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR328CWP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR328CWP [biosamplesummary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN274VRA|/analyses/ENCAN274VRA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF646LLB|/files/ENCFF646LLB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF646LLB|/files/ENCFF646LLB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR328CWP | float |
Histone_ChIP-seq_ENCSR328CWP |
Histone_ChIP-seq ENCSR328CWP [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K9me3"]
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[1.85, 12.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF371WUY.bed.gz | 199.89 KB | b2cfaf42185ff86a8d02c32eb04c6272 |
| ENCFF371WUY.bed.gz.dvc | 100.0 B | 85be9eb3eea3d3a1a3997bc03e44f051 |
| ENCFF371WUY.tabix.bed.gz | 104.4 KB | d63749e437c639a889a4d5c9ff31032e |
| ENCFF371WUY.tabix.bed.gz.dvc | 106.0 B | cb1d5f7e43f7eb379af2e3f0e968ee60 |
| ENCFF371WUY.tabix.bed.gz.tbi | 71.63 KB | 3bd3f3da273a909ac63e65066e95c827 |
| ENCFF371WUY.tabix.bed.gz.tbi.dvc | 109.0 B | f12c0aca3679ab2c06bfdb2b3b5cc967 |
| genomic_resource.yaml | 2.83 KB | 4939003e1466f3ad6c3a29ddef97dd9d |
| genomic_resource_original.yaml | 2.68 KB | 0e2a509808fbf110fc079c150bb4b2c1 |
| statistics/ |