Resource
| Id | Histone_ChIP-seq/ENCSR328CWP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR328CWP [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN274VRA|/analyses/ENCAN274VRA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF646LLB|/files/ENCFF646LLB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF646LLB|/files/ENCFF646LLB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.92. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR328CWP | float |
Histone_ChIP-seq_ENCSR328CWP |
Histone_ChIP-seq ENCSR328CWP [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (77 years)" and target="H3K9me3"]
|
 |
[1.85, 12.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6963344 | 0.22% | 10133 |
| chr1 | 381129 | 0.15% | 654 |
| chr2 | 323748 | 0.13% | 577 |
| chr3 | 309749 | 0.16% | 533 |
| chr4 | 329875 | 0.17% | 506 |
| chr5 | 510221 | 0.28% | 702 |
| chr6 | 229215 | 0.13% | 402 |
| chr7 | 327227 | 0.21% | 506 |
| chr8 | 238363 | 0.16% | 410 |
| chr9 | 288490 | 0.21% | 409 |
| chr10 | 292655 | 0.22% | 455 |
| chr11 | 224019 | 0.17% | 384 |
| chr12 | 337082 | 0.25% | 487 |
| chr13 | 114850 | 0.10% | 205 |
| chr14 | 135360 | 0.13% | 245 |
| chr15 | 210693 | 0.21% | 287 |
| chr16 | 208391 | 0.23% | 288 |
| chr17 | 132246 | 0.16% | 220 |
| chr18 | 100265 | 0.12% | 172 |
| chr19 | 1640923 | 2.80% | 1570 |
| chr20 | 110029 | 0.17% | 183 |
| chr21 | 75747 | 0.16% | 131 |
| chr22 | 81314 | 0.16% | 138 |
| chrX | 361753 | 0.23% | 669 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 10133 | 235 | 9227 | 687.19 | 531 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF371WUY.bed.gz | 199.89 KB | b2cfaf42185ff86a8d02c32eb04c6272 |
| ENCFF371WUY.tabix.bed.gz | 104.4 KB | d63749e437c639a889a4d5c9ff31032e |
| ENCFF371WUY.tabix.bed.gz.tbi | 71.63 KB | 3bd3f3da273a909ac63e65066e95c827 |
| genomic_resource.yaml | 2.83 KB | 4939003e1466f3ad6c3a29ddef97dd9d |
| statistics/ |