Resource

Id Histone_ChIP-seq/ENCSR327JOJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR327JOJ [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H2BK5ac"]
Description
Labels
  • accession: ENCSR327JOJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-10-01T07:15:54.883166+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR327JOJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H2BK5ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR327JOJ float

Histone_ChIP-seq_ENCSR327JOJ
Histone_ChIP-seq ENCSR327JOJ [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H2BK5ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR327JOJ [1.83, 21.9]
n
14,926,792
mean
4.45
sd
1.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 149267920.46% 49274
chr1 1619154 0.65% 5165
chr2 1123842 0.46% 3789
chr3 955291 0.48% 3212
chr4 625969 0.33% 2146
chr5 886041 0.49% 2944
chr6 825605 0.48% 2757
chr7 667474 0.42% 2266
chr8 719560 0.50% 2368
chr9 527879 0.38% 1810
chr10 789986 0.59% 2564
chr11 826667 0.61% 2705
chr12 833880 0.63% 2699
chr13 355483 0.31% 1237
chr14 539755 0.50% 1757
chr15 454846 0.45% 1467
chr16 446575 0.49% 1488
chr17 651936 0.78% 2075
chr18 468273 0.58% 1506
chr19 449227 0.77% 1541
chr20 402685 0.62% 1311
chr21 140065 0.30% 452
chr22 299500 0.59% 927
chr22_KI270736v1_random 135 0.07% 1
chrUn_KI270442v1 345 0.09% 1
chrX 299045 0.19% 1032
chrY 17574 0.03% 54
3340 contigs with no values (128503104 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49274 130 3165 302.93 241
global segment-length histogram

Files

Filename Size md5
ENCFF712HCL.bed.gz 999.87 KB 964103b9750b219dc5c061bd84a811f5
ENCFF712HCL.tabix.bed.gz 500.22 KB 660beea5521e6f41514320a490773c94
ENCFF712HCL.tabix.bed.gz.tbi 182.04 KB b8beb37e3f03a166ec2ce2e585247b00
genomic_resource.yaml 1.47 KB a8377e14464bdda64d3af10db46a150d
statistics/