Resource
| Id | Histone_ChIP-seq/ENCSR326VRD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR326VRD [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR326VRD | float |
Histone_ChIP-seq_ENCSR326VRD |
Histone_ChIP-seq ENCSR326VRD [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"]
|
 |
[1.23, 35.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 169294560 | 5.26% | 135054 |
| chr1 | 16197356 | 6.51% | 12776 |
| chr1_KI270712v1_random | 510 | 0.29% | 2 |
| chr1_KI270713v1_random | 1204 | 2.95% | 1 |
| chr2 | 12348450 | 5.10% | 9552 |
| chr3 | 9370833 | 4.73% | 7707 |
| chr4 | 5975908 | 3.14% | 5173 |
| chr5 | 8123558 | 4.47% | 6765 |
| chr6 | 7430462 | 4.35% | 6694 |
| chr7 | 9730983 | 6.11% | 7971 |
| chr8 | 8125272 | 5.60% | 5754 |
| chr9 | 7449230 | 5.38% | 5878 |
| chr10 | 8459321 | 6.32% | 7097 |
| chr11 | 7938628 | 5.88% | 6298 |
| chr12 | 7913868 | 5.94% | 6355 |
| chr13 | 3388825 | 2.96% | 2761 |
| chr14 | 5139144 | 4.80% | 4270 |
| chr14_GL000194v1_random | 1907 | 1.00% | 6 |
| chr15 | 5219455 | 5.12% | 4648 |
| chr16 | 8573472 | 9.49% | 6127 |
| chr17 | 10086224 | 12.11% | 7963 |
| chr18 | 3095416 | 3.85% | 2703 |
| chr19 | 8321289 | 14.20% | 5442 |
| chr20 | 5158720 | 8.00% | 3762 |
| chr21 | 2206654 | 4.72% | 1676 |
| chr22 | 5501711 | 10.83% | 3910 |
| chr22_KI270733v1_random | 535 | 0.30% | 2 |
| chrUn_GL000219v1 | 3505 | 1.96% | 5 |
| chrUn_KI270438v1 | 3061 | 2.72% | 4 |
| chrX | 3527313 | 2.26% | 3748 |
| chrY | 1746 | <0.01% | 4 |
| 3336 contigs with no values (128197353 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 135054 | 250 | 165161 | 1253.53 | 499 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF486UVH.bed.gz | 2.63 MB | 7e2a1f92907222244dfb9ca2af9bcf43 |
| ENCFF486UVH.tabix.bed.gz | 1.29 MB | eada8162925a37e676705cb114039915 |
| ENCFF486UVH.tabix.bed.gz.tbi | 161.47 KB | 933d40130c5c458012c3b26b0181ca61 |
| genomic_resource.yaml | 3.12 KB | 18abfdf4811d22c0fa088ac9acbb5352 |
| statistics/ |