Resource
| Id | Histone_ChIP-seq/ENCSR324UNL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR324UNL [biosample_summary="Homo sapiens H9" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN814SJL|/analyses/ENCAN814SJL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF748IXF|/files/ENCFF748IXF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8685576 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF882TNP|/files/ENCFF882TNP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9326523 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR324UNL | float |
Histone_ChIP-seq_ENCSR324UNL |
Histone_ChIP-seq ENCSR324UNL [biosample_summary="Homo sapiens H9" and target="H3K36me3"]
|
 |
[1.69, 21.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34322382 | 1.07% | 111781 |
| chr1 | 3624776 | 1.46% | 11343 |
| chr2 | 2282006 | 0.94% | 7965 |
| chr3 | 1892347 | 0.95% | 6417 |
| chr4 | 1177384 | 0.62% | 4341 |
| chr5 | 1651818 | 0.91% | 5644 |
| chr6 | 1536594 | 0.90% | 5161 |
| chr7 | 1598208 | 1.00% | 5399 |
| chr8 | 1086826 | 0.75% | 3804 |
| chr9 | 1452469 | 1.05% | 4766 |
| chr10 | 1275474 | 0.95% | 4324 |
| chr11 | 1763606 | 1.31% | 5570 |
| chr12 | 2037819 | 1.53% | 6480 |
| chr13 | 579294 | 0.51% | 2202 |
| chr14 | 1047699 | 0.98% | 3526 |
| chr15 | 1157603 | 1.14% | 3796 |
| chr16 | 1645065 | 1.82% | 4898 |
| chr17 | 2068243 | 2.48% | 6217 |
| chr18 | 462702 | 0.58% | 1764 |
| chr19 | 2410362 | 4.11% | 6876 |
| chr20 | 1070745 | 1.66% | 3294 |
| chr21 | 461592 | 0.99% | 1490 |
| chr22 | 1047404 | 2.06% | 3029 |
| chrX | 992166 | 0.64% | 3474 |
| chrY | 180 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 111781 | 110 | 7026 | 307.05 | 239 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF238IGV.bed.gz | 2.1 MB | 8b1f845a6e3654337726fc42000cfb37 |
| ENCFF238IGV.tabix.bed.gz | 1.03 MB | 24bec3421876db9ae8e71bc84626fa1f |
| ENCFF238IGV.tabix.bed.gz.tbi | 211.72 KB | 112fc976859d56d60ae7c35cbf9e55c6 |
| genomic_resource.yaml | 2.36 KB | 0a39ae5b387ce26b54724d9eca20a47b |
| statistics/ |