Resource
| Id | Histone_ChIP-seq/ENCSR323YPH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR323YPH [biosample_summary="Homo sapiens cingulate gyrus tissue female adult (75 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN723ZPN|/analyses/ENCAN723ZPN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF711MKR|/files/ENCFF711MKR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 29055760 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR323YPH | float |
Histone_ChIP-seq_ENCSR323YPH |
Histone_ChIP-seq ENCSR323YPH [biosample_summary="Homo sapiens cingulate gyrus tissue female adult (75 years)" and target="H3K36me3"]
|
 |
[1.75, 19.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48224049 | 1.50% | 99595 |
| chr1 | 4936448 | 1.98% | 10014 |
| chr2 | 3127766 | 1.29% | 6860 |
| chr3 | 2771493 | 1.40% | 5878 |
| chr4 | 1391198 | 0.73% | 3235 |
| chr5 | 1903301 | 1.05% | 4257 |
| chr6 | 1871262 | 1.10% | 4083 |
| chr7 | 1989910 | 1.25% | 4345 |
| chr8 | 1394195 | 0.96% | 3148 |
| chr9 | 2377334 | 1.72% | 4675 |
| chr10 | 1890910 | 1.41% | 4189 |
| chr11 | 2859021 | 2.12% | 5566 |
| chr12 | 2702581 | 2.03% | 5316 |
| chr13 | 738518 | 0.65% | 1736 |
| chr14 | 1536969 | 1.44% | 3345 |
| chr15 | 1724632 | 1.69% | 3647 |
| chr16 | 2735288 | 3.03% | 5316 |
| chr17 | 3337283 | 4.01% | 6497 |
| chr18 | 604343 | 0.75% | 1411 |
| chr19 | 3617267 | 6.17% | 6811 |
| chr20 | 1805984 | 2.80% | 3524 |
| chr21 | 642398 | 1.38% | 1277 |
| chr22 | 1795590 | 3.53% | 3315 |
| chrX | 470358 | 0.30% | 1150 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 99595 | 135 | 8775 | 484.2 | 372 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF110DNE.bed.gz | 1.82 MB | 7b8638ef4329207f170e71d8c011bcae |
| ENCFF110DNE.tabix.bed.gz | 937.95 KB | e14c2d8de07f736bc15fe544f328c6fc |
| ENCFF110DNE.tabix.bed.gz.tbi | 181.12 KB | d939e559bd408936ee0fefbde24d9e14 |
| genomic_resource.yaml | 2.01 KB | 77c63741f8cef72c11e308f7e328a4a1 |
| statistics/ |