Histone_ChIP-seq_ENCSR322MEI
Histone_ChIP-seq ENCSR322MEI [biosample_summary="Homo sapiens H1" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR322MEI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR322MEI [biosamplesummary="Homo sapiens H1" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN642WLT|/analyses/ENCAN642WLT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN642WLT|/analyses/ENCAN642WLT/} has in progress subobject document {6663902f-14f4-46c1-b44a-d7f14f8636fc|/documents/6663902f-14f4-46c1-b44a-d7f14f8636fc/} audit_not_compliant: Processed alignments file {ENCFF080SQV|/files/ENCFF080SQV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9804090 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF480QXG|/files/ENCFF480QXG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12381198 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF080SQV|/files/ENCFF080SQV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF080SQV|/files/ENCFF080SQV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR322MEI | float |
Histone_ChIP-seq_ENCSR322MEI |
Histone_ChIP-seq ENCSR322MEI [biosample_summary="Homo sapiens H1" and target="H3K4me2"]
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[1.39, 53.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF583ABZ.bed.gz | 1.31 MB | 0f731b909e1d5d9e2b46f1287802a38a |
| ENCFF583ABZ.bed.gz.dvc | 101.0 B | 954479e17efb009d46812a4b3b73a2a7 |
| ENCFF583ABZ.tabix.bed.gz | 574.37 KB | 8ae8178ce8e88495fb1b30c3e6221e73 |
| ENCFF583ABZ.tabix.bed.gz.dvc | 106.0 B | b95dce52e4f13feb007f4076e6cbfb9b |
| ENCFF583ABZ.tabix.bed.gz.tbi | 255.78 KB | 0392313c1334c2f3c19df63f9804498e |
| ENCFF583ABZ.tabix.bed.gz.tbi.dvc | 110.0 B | fe10df2fae5c27764894c43dcdb9f60f |
| genomic_resource.yaml | 3.91 KB | 09284a3de7124c1097efcbd3904467a0 |
| genomic_resource_original.yaml | 3.8 KB | 4ea3b8da210cc8be57823e03519c3f28 |
| statistics/ |