Resource

Id Histone_ChIP-seq/ENCSR322FGPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR322FGP [biosample_summary="Homo sapiens colonic mucosa tissue female adult (56 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR322FGP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000317/
  • biosample_summary: Homo sapiens colonic mucosa tissue female adult (56 years)
  • date_created: 2015-09-15T19:51:45.439542+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR322FGP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (56 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR322FGP float

Histone_ChIP-seq_ENCSR322FGP
Histone_ChIP-seq ENCSR322FGP [biosample_summary="Homo sapiens colonic mucosa tissue female adult (56 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR322FGP [1.93, 28.3]
n
25,938,186
mean
10.3
sd
4.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 259381860.81% 26859
chr1 2650145 1.06% 2680
chr2 1744544 0.72% 1776
chr3 1488743 0.75% 1481
chr4 1024425 0.54% 1044
chr5 1230495 0.68% 1206
chr6 1545276 0.90% 1513
chr7 1244448 0.78% 1307
chr8 928886 0.64% 978
chr9 1071640 0.77% 1130
chr10 1062970 0.79% 1108
chr11 1447768 1.07% 1455
chr12 1411187 1.06% 1433
chr13 508420 0.44% 508
chr14 896473 0.84% 917
chr15 853899 0.84% 884
chr16 1034904 1.15% 1099
chr17 1574298 1.89% 1648
chr18 402091 0.50% 433
chr19 1788742 3.05% 1969
chr20 635556 0.99% 673
chr21 246549 0.53% 293
chr22 555756 1.09% 599
chrX 590971 0.38% 725
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26859 240 10185 965.72 745
global segment-length histogram

Files

Filename Size md5
ENCFF068YGR.bed.gz 570.08 KB 225956b41c52fad6d51142f0f90d9c2a
ENCFF068YGR.tabix.bed.gz 282.55 KB a277c870c1a338f77c24f4e9e5437fb8
ENCFF068YGR.tabix.bed.gz.tbi 139.79 KB b001f8d2b6635e000994ef8a6d0c3022
genomic_resource.yaml 1.52 KB f058e76665880d5109c8bbc1142a8edc
statistics/