Resource

Id Histone_ChIP-seq/ENCSR320MYRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR320MYR [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR320MYR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue male embryo (38 weeks)
  • date_created: 2017-03-22T16:16:49.938510+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR320MYR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (38 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR320MYR float

Histone_ChIP-seq_ENCSR320MYR
Histone_ChIP-seq ENCSR320MYR [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR320MYR [1.26, 36]
n
25,241,014
mean
15.8
sd
7.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 252410140.78% 21113
chr1 2527285 1.02% 2104
chr2 1679553 0.69% 1399
chr3 1443080 0.73% 1187
chr4 1024562 0.54% 848
chr5 1243346 0.68% 971
chr6 1567600 0.92% 1287
chr7 1277015 0.80% 1064
chr8 909489 0.63% 758
chr9 1052514 0.76% 880
chr10 1018878 0.76% 832
chr11 1376175 1.02% 1116
chr12 1304540 0.98% 1077
chr13 495130 0.43% 427
chr14 843204 0.79% 696
chr15 828039 0.81% 704
chr16 996966 1.10% 832
chr17 1436505 1.73% 1225
chr18 410524 0.51% 357
chr19 1699632 2.90% 1475
chr20 609451 0.95% 519
chr21 254876 0.55% 227
chr22 535750 1.05% 465
chrX 673572 0.43% 633
chrY 33328 0.06% 30
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21113 187 12215 1195.52 1015
global segment-length histogram

Files

Filename Size md5
ENCFF754TYJ.bed.gz 513.59 KB 103a8a54d2e396a5d730a340b8d65fd0
ENCFF754TYJ.tabix.bed.gz 236.31 KB a2f7840a51622603ed021c3d38db9c93
ENCFF754TYJ.tabix.bed.gz.tbi 134.71 KB fe55158b269068f6f3bb625697d6ef0e
genomic_resource.yaml 1.52 KB 0353c8f11bfc623fb30459122e812183
statistics/