Resource

Id Histone_ChIP-seq/ENCSR318DAPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR318DAP [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR318DAP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0014455/
  • biosample_summary: Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)
  • date_created: 2015-09-15T19:52:46.816474+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR318DAP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years) nuclear fraction
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR318DAP float

Histone_ChIP-seq_ENCSR318DAP
Histone_ChIP-seq ENCSR318DAP [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR318DAP [1.95, 32.6]
n
34,912,008
mean
6.16
sd
2.97

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 349120081.09% 65208
chr1 2095473 0.84% 4128
chr1_KI270709v1_random 2261 3.38% 5
chr1_KI270712v1_random 957 0.54% 2
chr2 2321355 0.96% 4566
chr2_KI270716v1_random 2960 1.92% 6
chr3 1737265 0.88% 3554
chr4 1991490 1.05% 3953
chr4_GL000008v2_random 4802 2.29% 2
chr5 2315959 1.28% 4361
chr5_GL000208v1_random 349 0.38% 1
chr6 1498807 0.88% 3096
chr7 2248097 1.41% 4247
chr8 1644643 1.13% 3279
chr9 1199774 0.87% 2241
chr9_KI270719v1_random 1708 0.97% 3
chr9_KI270720v1_random 388 0.99% 2
chr10 1697817 1.27% 3181
chr11 1397254 1.03% 2751
chr12 1767218 1.33% 3173
chr13 900276 0.79% 1906
chr14 874291 0.82% 1737
chr14_GL000225v1_random 50160 23.75% 72
chr14_KI270722v1_random 7571 3.90% 13
chr15 898504 0.88% 1627
chr16 1300228 1.44% 2368
chr16_KI270728v1_random 1401 0.07% 2
chr17 708916 0.85% 1319
chr17_GL000205v2_random 2289 1.23% 5
chr17_KI270729v1_random 48852 17.40% 52
chr17_KI270730v1_random 19237 17.09% 20
chr18 678225 0.84% 1388
chr19 3576044 6.10% 4683
chr20 808617 1.25% 1455
chr21 522886 1.12% 875
chr22 431189 0.85% 803
chr22_KI270732v1_random 845 2.03% 2
chr22_KI270733v1_random 623 0.35% 2
chr22_KI270735v1_random 2723 6.36% 4
chr22_KI270736v1_random 12410 6.82% 14
chr22_KI270738v1_random 5735 5.77% 18
chrUn_GL000216v2 62594 35.44% 34
chrUn_GL000219v1 2886 1.61% 6
chrUn_GL000220v1 174 0.11% 1
chrUn_GL000224v1 6543 3.64% 10
chrUn_KI270435v1 1360 1.46% 3
chrUn_KI270438v1 21303 18.94% 29
chrUn_KI270442v1 83390 21.27% 61
chrUn_KI270448v1 238 2.98% 1
chrUn_KI270508v1 182 9.33% 1
chrUn_KI270511v1 349 4.29% 1
chrUn_KI270512v1 1426 6.28% 1
chrUn_KI270517v1 355 10.91% 1
chrUn_KI270519v1 3014 2.18% 5
chrUn_KI270538v1 426 0.47% 2
chrUn_KI270587v1 561 18.90% 1
chrUn_KI270589v1 3059 6.88% 1
chrUn_KI270590v1 1201 25.64% 1
chrUn_KI270591v1 907 15.65% 1
chrUn_KI270742v1 289 0.15% 1
chrUn_KI270744v1 1578 0.94% 2
chrUn_KI270750v1 1082 0.73% 3
chrUn_KI270751v1 1427 0.95% 3
chrUn_KI270756v1 7603 9.55% 9
chrUn_KI270757v1 4010 5.63% 4
chrX 1906884 1.22% 4086
chrY 19568 0.03% 24
3300 contigs with no values (122327841 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65208 170 39207 535.39 412
global segment-length histogram

Files

Filename Size md5
ENCFF947QAY.bed.gz 1.23 MB 3cd82029e5c22df1b09c69b9ea7cac3a
ENCFF947QAY.tabix.bed.gz 637.17 KB b471a59020f75022ad49f9090884573b
ENCFF947QAY.tabix.bed.gz.tbi 284.85 KB 0134905a894f8d30bb0c43e9d92c5672
genomic_resource.yaml 2.16 KB a551f523b78fb8fd5bbd8e6b87ff8ad1
statistics/