Resource
| Id | Histone_ChIP-seq/ENCSR316MNI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR316MNI [biosample_summary="Homo sapiens HUES64" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN659HAZ|/analyses/ENCAN659HAZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN659HAZ|/analyses/ENCAN659HAZ/} has in progress subobject document {6fcea101-93e1-4cab-9672-671ae910728e|/documents/6fcea101-93e1-4cab-9672-671ae910728e/} audit_not_compliant: Processed unfiltered alignments file {ENCFF405PBC|/files/ENCFF405PBC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 32295305 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF952QEX|/files/ENCFF952QEX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 38966129 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR316MNI | float |
Histone_ChIP-seq_ENCSR316MNI |
Histone_ChIP-seq ENCSR316MNI [biosample_summary="Homo sapiens HUES64" and target="H3K9me3"]
|
 |
[1.83, 27.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 95455616 | 2.97% | 118400 |
| chr1 | 6630794 | 2.66% | 7458 |
| chr2 | 5359275 | 2.21% | 7902 |
| chr3 | 4648930 | 2.34% | 6870 |
| chr4 | 4613682 | 2.43% | 6387 |
| chr5 | 4237315 | 2.33% | 5908 |
| chr6 | 3717766 | 2.18% | 5350 |
| chr7 | 6940136 | 4.36% | 7431 |
| chr8 | 6020068 | 4.15% | 6805 |
| chr9 | 3767549 | 2.72% | 5336 |
| chr10 | 4695649 | 3.51% | 5866 |
| chr11 | 4967775 | 3.68% | 5629 |
| chr12 | 4635954 | 3.48% | 5505 |
| chr13 | 2807333 | 2.45% | 3854 |
| chr14 | 3350121 | 3.13% | 3639 |
| chr15 | 2493616 | 2.44% | 3424 |
| chr16 | 2546734 | 2.82% | 2501 |
| chr17 | 2348969 | 2.82% | 3016 |
| chr18 | 3646790 | 4.54% | 3995 |
| chr19 | 7829637 | 13.36% | 7249 |
| chr20 | 2481748 | 3.85% | 2911 |
| chr21 | 1686090 | 3.61% | 2225 |
| chr22 | 1552720 | 3.06% | 1812 |
| chrX | 3105351 | 1.99% | 5035 |
| chrY | 1371614 | 2.40% | 2292 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 118400 | 158 | 54954 | 806.21 | 530 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF757QFN.bed.gz | 2.15 MB | 69f5b78c60fa66050b2272ff5de598ee |
| ENCFF757QFN.tabix.bed.gz | 1.09 MB | 14b0a05b270fea609c9267e78453badb |
| ENCFF757QFN.tabix.bed.gz.tbi | 322.5 KB | 53de8da888aefb565830828f5adfd35b |
| genomic_resource.yaml | 2.61 KB | c0a09e7afeda01860b97d5bc503277fd |
| statistics/ |