Histone_ChIP-seq_ENCSR316KHQ
Histone_ChIP-seq ENCSR316KHQ [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K36me3"]
×
| Id: | Histone_ChIP-seq/ENCSR316KHQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR316KHQ [biosamplesummary="Homo sapiens SU-DHL-6" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN592FZI|/analyses/ENCAN592FZI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN592FZI|/analyses/ENCAN592FZI/} has in progress subobject document {41baf627-8bd0-4ffd-8018-74ec0d075054|/documents/41baf627-8bd0-4ffd-8018-74ec0d075054/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF444SAY|/files/ENCFF444SAY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF444SAY|/files/ENCFF444SAY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF313FIN|/files/ENCFF313FIN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF313FIN|/files/ENCFF313FIN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.67. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR316KHQ | float |
Histone_ChIP-seq_ENCSR316KHQ |
Histone_ChIP-seq ENCSR316KHQ [biosample_summary="Homo sapiens SU-DHL-6" and target="H3K36me3"]
|
|
[1.49, 10.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF923LLZ.bed.gz | 1.8 MB | fa7eba52e4092709366dd369f022f35f |
| ENCFF923LLZ.bed.gz.dvc | 101.0 B | 7a090b88ec4266e17627ee7a02cc662c |
| ENCFF923LLZ.tabix.bed.gz | 844.79 KB | 3b98d57aa9269d9218d25185ef221bb0 |
| ENCFF923LLZ.tabix.bed.gz.dvc | 106.0 B | ed583aabedccdaf53cc9b3c22b353be1 |
| ENCFF923LLZ.tabix.bed.gz.tbi | 147.51 KB | 05f5fe274ce8a8ad95f4165c6f0ec545 |
| ENCFF923LLZ.tabix.bed.gz.tbi.dvc | 110.0 B | 61b1caf9b3290e42f8957c3a68d25451 |
| genomic_resource.yaml | 4.23 KB | 2b9f4e9ff0b5458265259d2fe12d7310 |
| genomic_resource_original.yaml | 4.12 KB | 19d643d50f16558b3ee92899dc42fd6c |
| statistics/ |