Resource

Id Histone_ChIP-seq/ENCSR315UUPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR315UUP [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR315UUP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:32.998719+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR315UUP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR315UUP float

Histone_ChIP-seq_ENCSR315UUP
Histone_ChIP-seq ENCSR315UUP [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR315UUP [1.73, 45]
n
129,642,619
mean
8.01
sd
5.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1296426194.03% 88871
chr1 13049687 5.24% 8630
chr2 9373467 3.87% 6642
chr3 7969064 4.02% 5540
chr4 5314529 2.79% 3657
chr5 7249638 3.99% 5066
chr6 6742677 3.95% 4629
chr7 6049599 3.80% 4436
chr8 5172117 3.56% 3639
chr9 6302343 4.55% 4176
chr10 6825999 5.10% 4459
chr11 8003610 5.92% 5203
chr12 6727356 5.05% 4721
chr13 3058220 2.67% 2126
chr14 4473550 4.18% 2938
chr15 4589117 4.50% 3137
chr16 4440566 4.92% 3189
chr17 7203235 8.65% 4698
chr18 2602628 3.24% 1826
chr19 4839956 8.26% 3357
chr20 3661154 5.68% 2459
chr21 1224322 2.62% 874
chr22 3088104 6.08% 2107
chrX 1681681 1.08% 1362
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 88871 235 63597 1458.77 945
global segment-length histogram

Files

Filename Size md5
ENCFF788DLD.bed.gz 1.89 MB a2c55977ed864ca9b76f95df5aa5290a
ENCFF788DLD.tabix.bed.gz 920.55 KB 0c7c45e8a93ae01bb4b23190220dfb79
ENCFF788DLD.tabix.bed.gz.tbi 250.43 KB 16b8ee8559a95af65f38b87837b23e15
genomic_resource.yaml 1.75 KB 19961e0ae2c4beffd6555b3e1d342187
statistics/